Gene omics information

Query gene ID At3g17650
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At3g17650821032YSL5 (YELLOW STRIPE LIKE 5)Arabidopsis thaliana metal-nicotianamine transporter YSL5S.X.H.G.
0.4050.8At2g14910815980unknown proteinF:unknown;P:unknown;C:chloroplast;BOPMS.X.H.G.
0.4050.8At3g54360824603protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MBOPAFVS.X.H.G.
0.3338.1At4g04040825716MEE51 (maternal effect embryo arrest 51)F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:embryonic development ending in seed dormancy, glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex;BOPMFAVS.X.H.G.
0.051.1At5g33280833300chloride channel-like (CLC) protein, putativeF:anion channel activity, voltage-gated chloride channel activity;P:chloride transport;C:intracellular, membrane;BMOFPAS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
18.199.5GSM7718200h pgm (Col-0) mutant replicate BGSE3424Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
17.899.5GSM7705600h Col-0 replicate BGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
16.599.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.999.2GSM2531572h into an extended nightGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
10.599.2GSM25316324h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.790823At1g48370841257YSL8 (YELLOW STRIPE LIKE 8)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.448e-159561At5g45450834581iron transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBFOAVC.G.S.X.
0.323e-38161At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.053e-1377At3g27020822319YSL6 (YELLOW STRIPE LIKE 6)Arabidopsis thaliana metal-nicotianamine transporter YSL6C.G.S.X.
0.063e-757At4g24120828512YSL1 (YELLOW STRIPE LIKE 1)Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).C.G.S.X.
0.023e-448At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.C.G.S.X.
0.013e-448At1g30460839925CPSF30Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.C.G.S.X.
0.061e-346At5g53550835437YSL3 (YELLOW STRIPE LIKE 3)F:oligopeptide transporter activity;P:oligopeptide transport, response to nematode;C:unknown;BPFOAVC.G.S.X.
0.011e-346At4g02800828171unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.084e-757Glycine maxGmaAffx.81949.1.S1_atAW597388--1e-12At1g48370YSL8 (YELLOW STRIPE LIKE 8)C.G.S.X.
0.119e-961Hordeum vulgareContig10949_atContig10949--4e-6At1g65730YSL7 (YELLOW STRIPE LIKE 7)C.G.S.X.
0.114e-1171Oryza sativaOs04g0674600AK069645.1-Oligopeptide transporter OPT superfamily protein2e-11At3g17650YSL5 (YELLOW STRIPE LIKE 5)C.G.S.X.
0.381e-38163Populus trichocarpaPtpAffx.203789.1.S1_atpmrna7477oligopeptide transporter OPT family-7e-39At3g17650YSL5 (YELLOW STRIPE LIKE 5)C.G.S.X.
0.092e-861Triticum aestivumTaAffx.94593.1.S1_atCA733739--1e-1At1g48370YSL8 (YELLOW STRIPE LIKE 8)C.G.S.X.
0.104e-1065Vitis vinifera1617990_s_atCB969113hypothetical protein LOC100249683-1e-16At1g48370YSL8 (YELLOW STRIPE LIKE 8)C.G.S.X.
0.012e+034Zea maysZm.4413.1.S1_s_atAI714737--4e-10At3g42790AL3 (ALFIN-LIKE 3)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage