Gene omics information

Query gene ID At3g17650
Gene name YSL5 (YELLOW STRIPE LIKE 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At3g17650821032YSL5 (YELLOW STRIPE LIKE 5)Arabidopsis thaliana metal-nicotianamine transporter YSL5S.X.H.G.
0.4050.8At2g14910815980unknown proteinF:unknown;P:unknown;C:chloroplast;BOPMS.X.H.G.
0.4050.8At3g54360824603protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MBOPAFVS.X.H.G.
0.3338.1At4g04040825716MEE51 (maternal effect embryo arrest 51)F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:embryonic development ending in seed dormancy, glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex;BOPMFAVS.X.H.G.
0.051.1At5g33280833300chloride channel-like (CLC) protein, putativeF:anion channel activity, voltage-gated chloride channel activity;P:chloride transport;C:intracellular, membrane;BMOFPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
35.799.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.099.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.299.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.199.5GSM7718200h pgm (Col-0) mutant replicate BGSE3424Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
17.899.5GSM7705600h Col-0 replicate BGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
16.599.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.299.4GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.199.2GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.999.2GSM2531572h into an extended nightGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
10.599.2GSM25316324h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.790823At1g48370841257YSL8 (YELLOW STRIPE LIKE 8)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.448e-159561At5g45450834581iron transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBFOAVC.G.S.X.
0.323e-38161At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.053e-1377At3g27020822319YSL6 (YELLOW STRIPE LIKE 6)Arabidopsis thaliana metal-nicotianamine transporter YSL6C.G.S.X.
0.063e-757At4g24120828512YSL1 (YELLOW STRIPE LIKE 1)Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).C.G.S.X.
0.023e-448At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.C.G.S.X.
0.013e-448At1g30460839925CPSF30Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.C.G.S.X.
0.061e-346At5g53550835437YSL3 (YELLOW STRIPE LIKE 3)F:oligopeptide transporter activity;P:oligopeptide transport, response to nematode;C:unknown;BPFOAVC.G.S.X.
0.011e-346At4g02800828171unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.084e-757Glycine maxGmaAffx.81949.1.S1_atAW597388--1e-12At1g48370YSL8 (YELLOW STRIPE LIKE 8)C.G.S.X.
0.119e-961Hordeum vulgareContig10949_atContig10949--4e-6At1g65730YSL7 (YELLOW STRIPE LIKE 7)C.G.S.X.
0.114e-1171Oryza sativaOs04g0674600AK069645.1-Oligopeptide transporter OPT superfamily protein2e-11At3g17650YSL5 (YELLOW STRIPE LIKE 5)C.G.S.X.
0.381e-38163Populus trichocarpaPtpAffx.203789.1.S1_atpmrna7477oligopeptide transporter OPT family-7e-39At3g17650YSL5 (YELLOW STRIPE LIKE 5)C.G.S.X.
0.092e-861Triticum aestivumTaAffx.94593.1.S1_atCA733739--1e-1At1g48370YSL8 (YELLOW STRIPE LIKE 8)C.G.S.X.
0.104e-1065Vitis vinifera1617990_s_atCB969113hypothetical protein LOC100249683-1e-16At1g48370YSL8 (YELLOW STRIPE LIKE 8)C.G.S.X.
0.012e+034Zea maysZm.4413.1.S1_s_atAI714737--4e-10At3g42790AL3 (ALFIN-LIKE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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