CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g17609

Gene name HYH (HY5-HOMOLOG)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO S.X. H.G.
0.48 62.5 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. S.X. H.G.
0.45 58.3 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF S.X. H.G.
0.43 55.3 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. S.X. H.G.
0.40 50.8 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. S.X. H.G.
0.40 50.8 At5g23730 832438 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA S.X. H.G.
0.36 43.6 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF S.X. H.G.
0.33 38.1 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF S.X. H.G.
0.30 32.1 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. S.X. H.G.
0.21 15.8 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.5 99.8 GSM133812 Diamond_A-1-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
42.3 99.8 GSM133813 Diamond_A-2-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
36.9 99.7 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
36.1 99.7 GSM142663 NE001_ATH1_A1-Evans-w20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
34.0 99.7 GSM133815 Diamond_A-4-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
33.5 99.7 GSM133808 Diamond_A-1-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
32.3 99.7 GSM142815 SS002_ATH1_A7-smith-13h GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
31.6 99.7 E-MEXP-807-raw-cel-1173273196
30.6 99.7 Evans_2-2_col-WT-cold_ATH1
29.7 99.7 GSM142666 NE001_ATH1_A4-Evans-m20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 1e-8 59 At5g11260 830996 HY5 (ELONGATED HYPOCOTYL 5) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. C.G. S.X.
0.01 5e-2 38 At5g52910 835368 ATIM (TIMELESS) homolog of Drosophila timeless C.G. S.X.
0.02 2e-1 36 At5g23970 832462 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB C.G. S.X.
0.01 2e-1 36 At5g40910 834092 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.01 8e-1 34 At5g67385 836874 protein binding / signal transducer F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMBF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-5 48 Glycine max Gma.8536.1.S1_s_at L28003.1 bZIP transcription factor bZIP36 /// TGACG-motif-binding factor - 1e-20 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.08 3e-5 48 Hordeum vulgare Contig15369_at Contig15369 - - 1e-4 At3g17609 HYH (HY5-HOMOLOG) C.G. S.X.
0.06 1e-1 38 Oryza sativa OsAffx.2569.1.S1_s_at - - - 0 C.G. S.X.
0.15 5e-15 81 Populus trichocarpa PtpAffx.12184.1.S1_a_at CN524707 hypothetical protein - 1e-14 At3g17609 HYH (HY5-HOMOLOG) C.G. S.X.
0.05 8e-1 34 Triticum aestivum TaAffx.32121.1.S1_at CA600532 - - 7e-1 At3g17609 HYH (HY5-HOMOLOG) C.G. S.X.
0.07 2e-7 54 Vitis vinifera 1609930_at CB340826 hypothetical LOC100243959 - 3e-24 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.03 5e+0 30 Zea mays Zm.8792.1.A1_at BM075656 - - 5e+0 At5g56720 malate dehydrogenase, cytosolic, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010224 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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