Gene omics information

Query gene ID At3g17609
Gene name HYH (HY5-HOMOLOG)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4862.5At3g17609821027HYH (HY5-HOMOLOG)F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFOS.X.H.G.
0.4862.5At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.S.X.H.G.
0.4558.3At5g42760834285-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMFS.X.H.G.
0.4355.3At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.S.X.H.G.
0.4050.8At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.S.X.H.G.
0.4050.8At5g23730832438nucleotide bindingF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPAS.X.H.G.
0.3643.6At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFS.X.H.G.
0.3338.1At3g09600820117myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOFS.X.H.G.
0.3032.1At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.S.X.H.G.
0.2115.8At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
51.599.8GSM133812Diamond_A-1-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
42.399.8GSM133813Diamond_A-2-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
36.999.7GSM133810Diamond_A-3-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
36.199.7GSM142663NE001_ATH1_A1-Evans-w20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
34.099.7GSM133815Diamond_A-4-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
33.599.7GSM133808Diamond_A-1-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
32.399.7GSM142815SS002_ATH1_A7-smith-13hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycle
29.799.7GSM142666NE001_ATH1_A4-Evans-m20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.101e-859At5g11260830996HY5 (ELONGATED HYPOCOTYL 5)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.C.G.S.X.
0.015e-238At5g52910835368ATIM (TIMELESS)homolog of Drosophila timelessC.G.S.X.
0.022e-136At5g23970832462transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBC.G.S.X.
0.012e-136At5g40910834092disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVC.G.S.X.
0.018e-134At5g67385836874protein binding / signal transducerF:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMBFC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.077e-548Glycine maxGma.8536.1.S1_s_atL28003.1bZIP transcription factor bZIP36 /// TGACG-motif-binding factor-1e-20At5g11260HY5 (ELONGATED HYPOCOTYL 5)C.G.S.X.
0.083e-548Hordeum vulgareContig15369_atContig15369--1e-4At3g17609HYH (HY5-HOMOLOG)C.G.S.X.
0.061e-138Oryza sativaOsAffx.2569.1.S1_s_at---0C.G.S.X.
0.155e-1581Populus trichocarpaPtpAffx.12184.1.S1_a_atCN524707hypothetical protein-1e-14At3g17609HYH (HY5-HOMOLOG)C.G.S.X.
0.058e-134Triticum aestivumTaAffx.32121.1.S1_atCA600532--7e-1At3g17609HYH (HY5-HOMOLOG)C.G.S.X.
0.072e-754Vitis vinifera1609930_atCB340826hypothetical LOC100243959-3e-24At5g11260HY5 (ELONGATED HYPOCOTYL 5)C.G.S.X.
0.035e+030Zea maysZm.8792.1.A1_atBM075656--5e+0At5g56720malate dehydrogenase, cytosolic, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010224A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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