CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g17160

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At3g17160 820973 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA S.X. H.G.
0.84 91.9 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.81 90.4 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.79 89.1 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA S.X. H.G.
0.74 86.1 At1g15940 838164 binding F:binding;P:biological_process unknown;C:unknown;MOBFPVA S.X. H.G.
0.74 86.1 At3g07780 819969 OBE1 (OBERON1) Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems. S.X. H.G.
0.74 86.1 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. S.X. H.G.
0.71 84.2 At2g27470 817292 NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11) F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA S.X. H.G.
0.67 81.6 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA S.X. H.G.
0.64 78.9 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
410.0 100.0 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
364.7 100.0 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
246.3 100.0 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
217.4 100.0 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
215.1 100.0 GSM311273 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
214.8 100.0 GSM311288 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
190.9 100.0 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
186.3 100.0 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
176.7 100.0 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
164.0 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.18 3e-19 95 At1g47970 841215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA C.G. S.X.
0.02 4e-3 42 At1g70750 843412 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFPBVA C.G. S.X.
0.02 1e-2 40 At4g39550 830109 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOAFV C.G. S.X.
0.01 1e-2 40 At3g57330 824900 ACA11 (autoinhibited Ca2+-ATPase 11) F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:chloroplast, plasma membrane, vacuole;BMOFPAV C.G. S.X.
0.10 1e-2 40 At3g50550 824219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA C.G. S.X.
0.05 1e-2 40 At3g17170 820974 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVA C.G. S.X.
0.02 6e-2 38 At5g19320 832052 RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase. C.G. S.X.
0.02 6e-2 38 At4g18905 827625 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-2 40 Glycine max GmaAffx.24355.1.A1_at BU544399 - - 2e-2 At3g17160 unknown protein C.G. S.X.
0.04 2e-3 42 Hordeum vulgare HA10I22u_at HA10I22u - - 2e+1 At5g12340 unknown protein C.G. S.X.
0.06 5e-4 46 Oryza sativa OsAffx.27287.1.S1_at - - - 0 C.G. S.X.
0.06 9e-2 38 Populus trichocarpa PtpAffx.89304.1.A1_at CV229973 global transcription factor group - 1e-3 At5g46030 unknown protein C.G. S.X.
0.04 4e-3 42 Triticum aestivum TaAffx.105500.1.S1_at CA733406 - - 3e-1 At4g38930 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.10 1e-6 52 Vitis vinifera 1608876_at CA817147 hypothetical protein LOC100261976 - 2e-9 At1g47970 unknown protein C.G. S.X.
0.04 4e-1 34 Zea mays Zm.6500.2.A1_a_at AI734722 - - 8e-1 At3g17160 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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