CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g17060

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g17060 820963 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM S.X. H.G.
0.86 93.1 At5g12000 831073 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.86 93.1 At5g58170 835929 SVL5 (SHV3-LIKE 5) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF S.X. H.G.
0.81 90.4 At2g33420 817906 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.81 90.4 At3g06260 819800 GATL4 (Galacturonosyltransferase-like 4) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.79 89.1 At2g24450 816981 FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR) F:molecular_function unknown;P:N-terminal protein myristoylation;C:anchored to membrane;PBMOFVA S.X. H.G.
0.79 89.1 At3g20580 821605 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.78 88.6 At1g25240 839107 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat, mitochondrion;PMFBAO S.X. H.G.
0.78 88.6 At2g07040 815274 PRK2A Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth. S.X. H.G.
0.77 88.0 At1g70790 843416 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
152.1 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
144.7 99.9 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
143.2 99.9 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
127.4 99.9 E-MEXP-1138-raw-cel-1432772970
126.6 99.9 E-MEXP-1138-raw-cel-1432773162
123.0 99.9 E-MEXP-1138-raw-cel-1432773226
122.3 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
122.1 99.9 E-MEXP-1138-raw-cel-1432772682
122.1 99.9 E-MEXP-285-raw-cel-440782725
119.7 99.9 E-MEXP-1138-raw-cel-1432773098
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-1 38 At1g05310 837030 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVA C.G. S.X.
0.01 5e-1 36 At4g16370 827332 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) Encodes an oligopeptide transporter involved in metal homeostasis. C.G. S.X.
0.01 5e-1 36 At1g08730 837394 XIC Class XI myosin gene C.G. S.X.
0.01 2e+0 34 At5g39830 833979 DEG8 Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II. C.G. S.X.
0.02 8e+0 32 At5g44495 5008294 - Encodes a ECA1 gametogenesis related family protein C.G. S.X.
0.01 8e+0 32 At5g59740 836095 UDP-galactose/UDP-glucose transporter-related F:galactose transmembrane transporter activity;P:unknown;C:unknown;MFPOB C.G. S.X.
0.01 8e+0 32 At5g45610 834601 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max Gma.5658.2.S1_at BQ741786 - - 8e-1 At2g20784 unknown protein C.G. S.X.
0.03 4e+0 32 Hordeum vulgare Contig1248_s_at Contig1248 - - 3e-8 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.04 3e-1 38 Oryza sativa Os03g0309400 AY343494.2 - Pectinesterase family protein 2e-1 At3g17060 pectinesterase family protein C.G. S.X.
0.14 7e-1 36 Populus trichocarpa PtpAffx.207941.1.S1_at pmrna15760 hypothetical protein - 5e-1 At3g17060 pectinesterase family protein C.G. S.X.
0.04 3e-2 40 Triticum aestivum TaAffx.36894.2.S1_at BJ303490 - - 2e-2 At5g47500 pectinesterase family protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1610996_at BQ794786 pectinesterase - 2e-9 At1g53840 ATPME1 C.G. S.X.
0.05 1e-2 40 Zea mays Zm.3806.1.S1_at CF009077 hypothetical protein LOC100280019 - 4e-2 At3g17060 pectinesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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