CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g16850

Gene name glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At3g16850 820938 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA S.X. H.G.
0.46 59.8 At4g23820 828482 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.44 57.2 At1g01430 837247 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.42 53.9 At4g00400 828140 GPAT8 (glycerol-3-phosphate acyltransferase 8) Involved in cutin assembly. Is functional redundant of GPAT4. S.X. H.G.
0.40 50.8 At3g04910 819651 WNK1 (WITH NO LYSINE (K) 1) Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm. S.X. H.G.
0.36 43.6 At1g20010 838590 TUB5 beta tubulin S.X. H.G.
0.36 43.6 At1g33240 840218 AT-GTL1 (GT2-LIKE 1) Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. S.X. H.G.
0.29 30.3 At1g66150 842930 TMK1 (TRANSMEMBRANE KINASE 1) receptor-like transmembrane kinase I (TMK1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.0 99.5 E-MEXP-1304-raw-cel-1530619577
15.6 99.5 GSM131208 AtGen_D-42_3-FS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
15.2 99.4 GSM131210 AtGen_D-44_3-RS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
14.8 99.4 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
14.8 99.4 GSM131213 AtGen_D-47_3-US_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
14.1 99.4 Millenaar_A3_LL_Rep1_ATH1
13.6 99.4 GSM131178 AtGen_D-10_1-FS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
13.6 99.4 GSM131212 AtGen_D-46_3-AS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
13.5 99.4 GSM128659 Underwood_1-12_Mock-Inoculum-24h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
13.4 99.4 GSM131204 AtGen_D-38_3-AL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 1e-17 91 At5g49215 834981 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;PBFOMA C.G. S.X.
0.03 5e-11 69 At3g61490 825322 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.05 2e-7 57 At2g23900 816922 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA C.G. S.X.
0.08 3e-3 44 At3g62110 825384 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:vacuole;FPBOMAV C.G. S.X.
0.04 1e-2 42 At4g23820 828482 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-37 159 Glycine max Gma.12293.1.S1_at CD416826 - - 7e-20 At5g49215 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.05 2e-5 50 Hordeum vulgare Contig8090_at Contig8090 - - 4e-9 At5g49215 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.04 5e-3 44 Oryza sativa Os12g0554800 AK105676.1 - Polygalacturonase-like protein 6e-11 At5g49215 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.05 1e-2 42 Populus trichocarpa PtpAffx.58504.1.S1_at CK102969 hypothetical protein - 5e-3 At3g16850 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.05 8e-7 56 Triticum aestivum TaAffx.88359.1.S1_at CA597614 - - 3e-10 At5g49215 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1621225_at CB974537 hypothetical LOC100250089 - 1e-15 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 1e+0 34 Zea mays Zm.3412.1.S1_at CA405066 - - 1e-8 At3g42950 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00412 Glycoside Hydrolase
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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