CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g16800

Gene name protein phosphatase 2C, putative / PP2C, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At3g16800 820933 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, cytoplasm;PMOFV S.X. H.G.
0.25 22.6 At3g49760 824138 AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF S.X. H.G.
0.20 14.4 At3g50970 824261 LTI30 (LOW TEMPERATURE-INDUCED 30) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. S.X. H.G.
0.19 12.7 At3g24520 822047 AT-HSFC1 member of Heat Stress Transcription Factor (Hsf) family S.X. H.G.
0.08 2.3 At5g05790 830464 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
255.1 100.0 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
144.7 99.9 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
116.8 99.9 GSM131280 AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
116.7 99.9 GSM131279 AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
95.2 99.9 GSM184913 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
81.1 99.9 GSM131278 AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
77.0 99.9 GSM131277 AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
74.0 99.9 GSM131290 AtGen_6-2222_Osmoticstress-Roots-1.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
68.5 99.9 GSM74900 Wildtype_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
62.4 99.8 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 4e-11 69 At5g27930 832860 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB C.G. S.X.
0.12 4e-11 69 At3g05640 819731 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation;C:cellular_component unknown;PMOFV C.G. S.X.
0.02 5e-1 36 At5g36250 833622 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:nucleus;PMOFVB C.G. S.X.
0.01 5e-1 36 At2g28520 817400 VHA-A1 (VACUOLAR PROTON ATPASE A 1) Vacuolar proton ATPase subunit VHA-a isoform 1. Localized in the trans-Golgi network. C.G. S.X.
0.01 5e-1 36 At2g24130 816947 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-7 56 Glycine max GmaAffx.75245.1.S1_at AI737035 - - 2e-11 At5g27930 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HV_CEb0012P03f_at HV_CEb0012P03f - - 3e+0 At5g17390 universal stress protein (USP) family protein C.G. S.X.
0.02 4e+0 34 Oryza sativa Os08g0343500 9636.m02500 - - 9e-1 At5g39310 ATEXPA24 (ARABIDOPSIS THALIANA EXPANSIN A24) C.G. S.X.
0.12 3e-12 73 Populus trichocarpa PtpAffx.208451.1.S1_at pmrna16790 hypothetical protein - 2e-9 At3g05640 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.26393.1.A1_at CD490643 - - 6e+0 At4g10695 unknown protein C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1615821_at CA818800 hypothetical protein LOC100252905 - 1e-31 At4g09350 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.03 6e-2 38 Zea mays Zm.978.1.A1_at CF627012 - - 1e-1 At3g16800 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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