CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g16770

Gene name ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g16770 820929 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. S.X. H.G.
0.12 4.9 At2g43540 818956 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P S.X. H.G.
0.11 4.1 At5g14780 831330 FDH (FORMATE DEHYDROGENASE) Encodes a NAD-dependent formate dehydrogenase. S.X. H.G.
0.08 2.3 At1g64230 842728 ubiquitin-conjugating enzyme, putative F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:plasma membrane;MFOPV S.X. H.G.
0.01 0.2 At3g01520 821122 universal stress protein (USP) family protein F:molecular_function unknown;P:N-terminal protein myristoylation, response to stress;C:plasma membrane;BPAMOF S.X. H.G.
0.00 0.0 At1g01490 839440 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MOPBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
63.3 99.8 GSM245924 csn4-1_mutant_dark replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
35.5 99.7 GSM156791 albino rep1 GSE6788 Expression data of an albino mutant DS 13-2198-1
31.2 99.7 GSM245923 csn4-1_mutant_dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
27.8 99.7 GSM245919 csn3-1 mutant dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
27.8 99.7 E-MEXP-1112-raw-cel-1590665533
27.5 99.7 GSM257998 Phloem exudate_1 GSE10247 Transcriptome analysis of the Arabidopsis phloem
25.8 99.7 E-MEXP-1112-raw-cel-1590665689
23.7 99.6 GSM142638 MC002_ATH1_A6.1-dubos-5kc_repeat GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.6 99.6 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
23.1 99.6 GSM245922 csn4-1_mutant_dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 2e-12 73 At5g64750 836596 ABR1 (ABA REPRESSOR1) Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response. C.G. S.X.
0.09 2e-12 73 At4g11140 826715 CRF1 (CYTOKININ RESPONSE FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). C.G. S.X.
0.09 7e-12 71 At1g53910 841829 RAP2.12 encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. C.G. S.X.
0.12 6e-9 61 At1g72360 843568 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. C.G. S.X.
0.05 1e-7 57 At1g43160 840915 RAP2.6 (related to AP2 6) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-7 56 Glycine max Gma.12330.2.S1_at BI972758 - - 5e-15 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.03 1e-2 40 Hordeum vulgare AF427791_CDS-9_at AF427791_CDS-9 - - 2e-3 At1g73500 MKK9 (MAP KINASE KINASE 9) C.G. S.X.
0.07 2e-4 48 Oryza sativa Os06g0194000 BP184460 - Ethylene responsive element binding factor 5(AtERF5) 9e-7 At3g14230 RAP2.2 C.G. S.X.
0.17 6e-19 95 Populus trichocarpa PtpAffx.4624.1.S1_at CV254219 AP2/ERF domain-containing transcription factor - 7e-19 At3g16770 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) C.G. S.X.
0.07 3e-2 40 Triticum aestivum Ta.14074.2.S1_at CA681817 - - 5e-12 At1g72360 ethylene-responsive element-binding protein, putative C.G. S.X.
0.10 3e-5 48 Vitis vinifera 1609683_at CF604955 hypothetical protein LOC100249982 - 2e-11 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.07 6e-1 34 Zea mays Zm.815.1.S1_at CF626555 ethylene response element binding protein - 6e-8 At3g14230 RAP2.2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009753 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
X GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
X GO:0009735 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
X GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
X GO:0008219 The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
X GO:0009723 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
S GO:0009873 A series of molecular signals mediated by ethylene (ethene).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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