CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g16720

Gene name ATL2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At3g16720 820924 ATL2 RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. S.X. H.G.
0.75 86.9 At3g57530 824920 CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro S.X. H.G.
0.67 81.6 At1g11050 837646 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.63 78.1 At2g33580 817923 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA S.X. H.G.
0.62 77.3 At2g39650 818548 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.61 76.7 At1g69890 843325 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.60 75.7 At5g46780 834721 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV S.X. H.G.
0.60 75.7 At5g47910 834842 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. S.X. H.G.
0.59 74.7 At1g27770 839670 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor. S.X. H.G.
0.59 74.7 At5g59450 836064 scarecrow-like transcription factor 11 (SCL11) F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;PBMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
90.1 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
89.0 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
86.5 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
73.6 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
68.8 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.1 99.8 GSM39198 RRE1_Chitin4 GSE2169 rre1 and rre2 mutants
50.5 99.8 E-MEXP-807-raw-cel-1173273170
50.3 99.8 E-MEXP-807-raw-cel-1173273116
47.9 99.8 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
46.5 99.8 GSM142654 MC002_ATH1_A11.2-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 2e-24 113 At4g15975 827281 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;MPFOV C.G. S.X.
0.07 9e-15 81 At1g53820 841819 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.04 2e-6 54 At1g72310 843563 ATL3 Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). C.G. S.X.
0.05 2e-3 44 At5g58580 835972 ATL63 (ARABIDOPSIS TÓ F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.03 7e-3 42 At4g24015 2745724 zinc finger (RING-H2 type) protein-related F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV C.G. S.X.
0.02 3e-2 40 At5g52940 835371 unknown protein F:unknown;P:unknown;C:mitochondrion;P C.G. S.X.
0.01 1e-1 38 At5g67200 836855 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.04 1e-1 38 At5g40250 834023 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.01 1e-1 38 At4g20270 827774 BAM3 (BARELY ANY MERISTEM 3) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 7e-7 56 Glycine max GmaAffx.53152.1.S1_at BE823592 - - 6e-7 At3g16720 ATL2 C.G. S.X.
0.03 4e-3 42 Hordeum vulgare HA31F17r_at HA31F17r - - 4e-3 At4g15975 protein binding / zinc ion binding C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.7761.1.S1_at - - - 0 C.G. S.X.
0.19 8e-16 85 Populus trichocarpa PtpAffx.79516.1.S1_at AY780430.1 - - 7e-16 At3g16720 ATL2 C.G. S.X.
0.03 8e-3 42 Triticum aestivum TaAffx.105901.1.S1_at CA728021 - - 2e-2 At5g20620 UBQ4 C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1622773_at CF605812 hypothetical protein LOC100253381 - 2e-2 At4g15975 protein binding / zinc ion binding C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.852.1.A1_at AI770652 - - 1e-11 At3g12690 AGC1.5 (AGC KINASE 1.5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
X GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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