CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g16620

Gene name ATTOC120

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g16620 820913 ATTOC120 component of TOC complex, plastid protein import machinery. S.X. H.G.
1.00 100.0 At1g77550 844091 protein binding / tubulin-tyrosine ligase F:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFB S.X. H.G.
0.92 96.0 At1g55255 - - - S.X. H.G.
0.92 96.0 At2g26460 817187 RED family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;MFOPVB S.X. H.G.
0.92 96.0 At2g47800 819392 ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4) Encodes a plasma membrane localized ATPase transporter involved in multidrug transport. The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim. S.X. H.G.
0.92 96.0 At3g07510 819939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.67 81.6 At1g72090 843540 radical SAM domain-containing protein / TRAM domain-containing protein F:iron-sulfur cluster binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, membrane;OBAMP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1935.2 100.0 GSM133781 Lindsey_1-6_globular-basal_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
400.8 100.0 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
159.2 99.9 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
88.7 99.9 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
71.9 99.9 GSM133771 Lindsey_1-23_torpedo-apical_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
64.2 99.8 GSM133770 Lindsey_1-22_torpedo-apical_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
58.7 99.8 GSM133769 Lindsey_1-21_torpedo-basal_Rep6_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
43.3 99.8 GSM133772 Lindsey_1-24_torpedo-apical_Rep6_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.6 99.8 GSM133779 Lindsey_1-5_globular-basal_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.6 99.7 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 0 2827 At2g16640 816165 TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132) F:transmembrane receptor activity;P:protein targeting to chloroplast;C:chloroplast outer membrane, membrane;OMFBPVA C.G. S.X.
0.01 4e-4 48 At5g58760 835990 DDB2 (damaged DNA-binding 2) F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA C.G. S.X.
0.02 2e-3 46 At5g20300 832152 chloroplast outer membrane protein, putative F:GTP binding;P:unknown;C:chloroplast outer membrane, intracellular;MPBOF C.G. S.X.
0.01 7e-3 44 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e-2 42 At5g66540 836786 - F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVA C.G. S.X.
0.01 1e-1 40 At5g12050 831078 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
0.01 1e-1 40 At3g53690 824536 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MFOP C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 4e-5 52 Glycine max Gma.297.1.S1_at BU965093 - - 9e-17 At2g16640 TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132) C.G. S.X.
0.03 5e-8 59 Hordeum vulgare Contig18777_at Contig18777 - - 5e-1 At3g45275 - C.G. S.X.
0.06 4e-18 95 Oryza sativa Os10g0548800 AK072270.1 - Chloroplast outer envelope protein-like(Chloroplast outer envelope membrane-associated proteinToc120) 2e-18 At3g16620 ATTOC120 C.G. S.X.
0.29 2e-84 315 Populus trichocarpa PtpAffx.104325.1.S1_at CA929650 hypothetical protein - 3e-85 At3g16620 ATTOC120 C.G. S.X.
0.01 1e-1 40 Triticum aestivum TaAffx.38843.1.S1_at BJ208630 - - 2e-1 At5g49710 unknown protein C.G. S.X.
0.07 5e-10 65 Vitis vinifera 1617655_at CB348593 hypothetical protein LOC100262391 - 5e-10 At3g16620 ATTOC120 C.G. S.X.
0.02 1e-2 42 Zea mays Zm.5881.1.A1_at CA401815 - - 9e-8 At2g16640 TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0045036 The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage