CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g16530

Gene name legume lectin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At3g16530 820901 legume lectin family protein Lectin like protein whose expression is induced upon treatment with chitin oligomers. S.X. H.G.
0.55 70.6 At1g26380 839180 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM S.X. H.G.
0.44 57.2 At1g26420 839184 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA S.X. H.G.
0.40 50.8 At3g49620 824124 DIN11 (DARK INDUCIBLE 11) encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. S.X. H.G.
0.25 22.6 At5g25250 832596 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV S.X. H.G.
0.16 8.8 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. S.X. H.G.
0.15 7.8 At3g63380 825513 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
70.3 99.9 GSM322548 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep1 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
60.4 99.8 E-NASC-76-raw-cel-1359878951
57.8 99.8 GSM322550 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
57.0 99.8 GSM131162 AtGen_C-12_3-Pi-6_REP3_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
54.6 99.8 GSM322549 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
50.6 99.8 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
49.6 99.8 GSM131161 AtGen_C-11_2-Pi-6_REP2_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
47.6 99.8 GSM131160 AtGen_C-10_1-Pi-6_REP1_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
46.6 99.8 GSM322556 genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
46.2 99.8 GSM322555 genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 0 969 At3g15356 820768 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall;PBO C.G. S.X.
0.57 6e-34 145 At5g03350 831863 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBO C.G. S.X.
0.32 7e-12 71 At1g53080 841742 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:plant-type cell wall;PBO C.G. S.X.
0.07 7e-6 52 At1g53060 841740 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.09 7e-6 52 At1g53070 841741 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:cell wall, plant-type cell wall;PBO C.G. S.X.
0.03 1e-1 38 At3g12820 820464 AtMYB10 (myb domain protein 10) Member of the R2R3 factor gene family. C.G. S.X.
0.03 4e-1 36 At5g12990 831139 CLE40 (CLAVATA3/ESR-RELATED 40) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. C.G. S.X.
0.02 4e-1 36 At4g37160 829870 sks15 (SKU5 Similar 15) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA C.G. S.X.
0.01 4e-1 36 At1g72520 843584 lipoxygenase, putative F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFO C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.5069.3.S1_at AW704705 - - 6e-5 At1g75388 CPuORF5 (Conserved peptide upstream open reading frame 5) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig23388_at Contig23388 - - 6e-1 At1g70600 structural constituent of ribosome C.G. S.X.
0.03 8e-1 36 Oryza sativa OsAffx.21297.1.S1_at - - - 0 C.G. S.X.
0.04 6e-1 36 Populus trichocarpa PtpAffx.209144.1.S1_at pmrna18108 hypothetical protein - 1e-1 At3g16530 legume lectin family protein C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.7612.1.S1_at CA655724 - - 4e+0 At5g48510 speckle-type POZ protein-related C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1616989_at BQ799388 - - 4e+0 At5g50345 - C.G. S.X.
0.02 3e+0 32 Zea mays Zm.16330.1.S1_at BG320217 hypothetical protein LOC100276570 - 2e+0 At5g44574 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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