Gene omics information

Query gene ID At3g16470
Gene name JR1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2522.6At3g16470820895JR1JA-responsive geneS.X.H.G.
0.5065.3At1g52410841671TSA1 (TSK-ASSOCIATING PROTEIN 1)Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.S.X.H.G.
0.4050.8At1g52400841670BGLU18 (BETA GLUCOSIDASE 18)encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formationS.X.H.G.
0.2930.3At2g34490818012CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2)Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH.S.X.H.G.
0.2522.6At1g31710840058copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
25.799.7E-MEXP-1100-raw-cel-1378752196
22.499.6E-MEXP-1100-raw-cel-1378752164
18.099.5GSM128655Underwood_1-8_DC3000-10e6-24h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
16.999.5GSM131109AtGen_B-37_3-2-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
16.899.5GSM131344AtGen_6-4312_Droughtstress-Shoots-3.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)
16.599.5E-MEXP-728-raw-cel-1062074155
16.499.5E-MEXP-728-raw-cel-1062074684
15.599.5E-MEXP-1246-raw-cel-1504120291
15.399.4GSM134394St.Clair_1-91_267b_Tsu-1_0.02%-silwet_Rep1_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1
15.399.4GSM131203AtGen_D-37_3-BL_REP3_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.085e-1479At1g52000841629jacalin lectin family proteinF:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVAC.G.S.X.
0.122e-757At1g52040841633MBP1 (MYROSINASE-BINDING PROTEIN 1)Encodes myrosinase-binding protein expressed in flowers.C.G.S.X.
0.097e-756At3g21380821692-F:unknown;P:unknown;C:cellular_component unknown;POC.G.S.X.
0.103e-654At2g39310818516JAL22 (JACALIN-RELATED LECTIN 22)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.045e-550At5g38550833843jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBC.G.S.X.
0.067e-446At2g33070817869NSP2 (NITRILE SPECIFIER PROTEIN 2)Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-240Glycine maxGma.13653.1.A1_atCD402368--2e+0At5g54531unknown proteinC.G.S.X.
0.011e+034Hordeum vulgareContig5227_atContig5227--1e-1At1g23750DNA-binding protein-relatedC.G.S.X.
0.025e+034Oryza sativaOs06g01696009634.m00660--1e-8At2g29550TUB7C.G.S.X.
0.026e-240Populus trichocarpaPtpAffx.205797.1.S1_atpmrna11460hypothetical protein-3e+0At5g46730glycine-rich proteinC.G.S.X.
0.023e+034Triticum aestivumTa.6181.3.S1_x_atBJ267492--2e-2At1g47970unknown proteinC.G.S.X.
0.028e-134Vitis vinifera1619971_atCB970981hypothetical protein LOC100240792-9e-4At3g16420PBP1 (PYK10-BINDING PROTEIN 1)C.G.S.X.
0.023e-136Zea maysZm.2319.2.A1_atCD444652--5e+0At5g65350histone H3C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009611A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009753A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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