CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g16450

Gene name jacalin lectin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At3g16450 820893 jacalin lectin family protein F:molecular_function unknown;P:response to cold;C:nucleus;PO S.X. H.G.
0.89 94.6 At3g09260 820082 PYK10 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica. S.X. H.G.
0.89 94.6 At3g16420 820890 PBP1 (PYK10-BINDING PROTEIN 1) The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. S.X. H.G.
0.80 89.8 At3g16390 820886 NSP3 (NITRILE SPECIFIER PROTEIN 3) Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. S.X. H.G.
0.73 85.5 At3g15950 820839 NAI2 Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.2 99.7 GSM157339 Coates_1-11_Col-3_Rep3_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
25.3 99.6 GSM157336 Coates_1-8_ara1/2mut_Rep2_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
23.6 99.6 GSM131571 ATGE_98_B GSE5631 AtGenExpress: Developmental series (roots)
22.0 99.6 GSM131204 AtGen_D-38_3-AL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
21.8 99.6 GSM131202 AtGen_D-36_3-RL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
21.7 99.6 GSM157337 Coates_1-9_Col-0_Rep3_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
21.1 99.6 GSM133717 Urwin_A-1-Urwin-Con_SLD GSE5724 Plant gene expression associated with susceptibility to nematodes
20.5 99.6 GSM157338 Coates_1-10_ara1OX_Rep3_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
20.4 99.6 GSM157333 Coates_1-5_Col-0_Rep2_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
20.4 99.6 GSM131573 ATGE_99_A GSE5631 AtGenExpress: Developmental series (roots)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 642 At3g16440 820892 ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) myrosinase-binding protein-like protein (AtMLP-300B) mRNA, C.G. S.X.
0.39 6e-102 371 At3g16420 820890 PBP1 (PYK10-BINDING PROTEIN 1) The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. C.G. S.X.
0.36 6e-99 361 At3g16430 820891 JAL31 (JACALIN-RELATED LECTIN 31) F:copper ion binding;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Glycine max Gma.7330.1.S1_at BQ628103 - - 9e-33 At3g52990 pyruvate kinase, putative C.G. S.X.
0.02 2e-1 36 Hordeum vulgare HT07O20u_at HT07O20u - - 1e+0 At2g16460 metal ion binding C.G. S.X.
0.01 4e+0 34 Oryza sativa OsAffx.4250.1.S1_s_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.205798.1.S1_at pmrna11461 hypothetical protein - 2e-1 At5g21430 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 7e+0 32 Triticum aestivum TaAffx.9410.1.S1_at CA599598 - - 8e-1 At2g15130 plant basic secretory protein (BSP) family protein C.G. S.X.
0.02 5e-1 34 Vitis vinifera 1619575_at BQ793880 - - 1e-3 At1g48160 signal recognition particle 19 kDa protein, putative / SRP19, putative C.G. S.X.
0.03 2e-1 36 Zea mays ZmAffx.999.1.S1_at AI881222 hypothetical protein LOC100279401 - 5e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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