Gene omics information

Query gene ID At3g16420
Gene name PBP1 (PYK10-BINDING PROTEIN 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9195.6At3g16420820890PBP1 (PYK10-BINDING PROTEIN 1)The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.S.X.H.G.
0.9195.6At3g09260820082PYK10Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.S.X.H.G.
0.9195.6At3g15950820839NAI2Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.S.X.H.G.
0.9195.6At3g16460820894jacalin lectin family proteinF:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVAS.X.H.G.
0.8994.6At3g20370821582meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFS.X.H.G.
0.7385.5At3g16450820893jacalin lectin family proteinF:molecular_function unknown;P:response to cold;C:nucleus;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
21.199.6GSM157336Coates_1-8_ara1/2mut_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
14.999.4E-MEXP-828-raw-cel-1156922595
14.699.4E-MEXP-828-raw-cel-1156922572
13.399.4GSM157338Coates_1-10_ara1OX_Rep3_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
13.099.4E-MEXP-828-raw-cel-1156922553
12.999.3E-MEXP-828-raw-cel-1156922613
11.599.3GSM291128root - 08% oxygen - 48h - BGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
11.499.3E-MEXP-1112-raw-cel-1590665481
11.399.3E-NASC-78-raw-cel-1463195203
11.099.2GSM157337Coates_1-9_Col-0_Rep3_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.900958At3g16430820891JAL31 (JACALIN-RELATED LECTIN 31)F:copper ion binding;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.396e-102371At3g16450820893jacalin lectin family proteinF:molecular_function unknown;P:response to cold;C:nucleus;POC.G.S.X.
0.411e-63244At3g16440820892ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)myrosinase-binding protein-like protein (AtMLP-300B) mRNA,C.G.S.X.
0.281e-50200At3g16410820888NSP4 (NITRILE SPECIFIER PROTEIN 4)Encodes a nitrile-specifier protein NSP4. NSP4 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.026e-136Glycine maxGmaAffx.75948.1.S1_atBF424136--6e-15At1g08470strictosidine synthase family proteinC.G.S.X.
0.032e-136Hordeum vulgareEBro08_SQ002_H13_atEBro08_SQ002_H13--6e-1At3g43432unknown proteinC.G.S.X.
0.039e-136Oryza sativaOs11g01388009639.m00346--2e-1At3g16420PBP1 (PYK10-BINDING PROTEIN 1)C.G.S.X.
0.026e-136Populus trichocarpaPtp.7073.1.S1_atCV278494hypothetical protein-1e-3At1g09740ethylene-responsive protein, putativeC.G.S.X.
0.037e+032Triticum aestivumTaAffx.56694.1.S1_atCA646482--2e+0Atcg01060-C.G.S.X.
0.045e-444Vitis vinifera1619971_atCB970981hypothetical protein LOC100240792-9e-4At3g16420PBP1 (PYK10-BINDING PROTEIN 1)C.G.S.X.
0.021e+130Zea maysZm.9872.1.A1_atBQ538232hypothetical protein LOC100277709-1e+0At1g62840unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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