Gene omics information

Query gene ID At3g16360
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g16360820883AHP4 (HPT PHOSPHOTRANSMITTER 4)Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).S.X.H.G.
0.3439.8At1g64360842743unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PS.X.H.G.
0.3338.1At2g39850818572identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMS.X.H.G.
0.3235.7At1g67870843115glycine-rich proteinF:unknown;P:biological_process unknown;C:unknown;MOBPFAVS.X.H.G.
0.3133.8At1g64370842744unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPS.X.H.G.
0.3133.8At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVS.X.H.G.
0.3133.8At2g32290817789BAM6 (BETA-AMYLASE 6)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBOS.X.H.G.
0.3032.1At1g22370838844AtUGT85A5 (UDP-glucosyl transferase 85A5)F:transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:unknown;PMVBOFS.X.H.G.
0.2830.3At2g32870817848meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFS.X.H.G.
0.2830.3At1g18710838453AtMYB47 (myb domain protein 47)Member of the R2R3 factor gene family.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
148.399.9GSM131299AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
93.899.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
84.499.9GSM133092JD AT+EO COL WT EXP2 05D UNINFECTEDGSE5686AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
75.399.9GSM133293NO.30GSE5698AtGenExpress: Cytokinin treatment of seedlings
66.699.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-136At3g45770823720oxidoreductase, zinc-binding dehydrogenase family proteinF:zinc ion binding, ATP binding;P:oxidation reduction, metabolic process;C:mitochondrion, chloroplast, nucleus;BOFMPAC.G.S.X.
0.022e-136At3g13920820605EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)eukaryotic translation initiation factor 4A-1C.G.S.X.
0.062e-136At2g268655007912-Encodes a Plant thionin family proteinC.G.S.X.
0.027e-134At4g35470829699leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:plasma membrane;MPBOFAVC.G.S.X.
0.033e+032At5g11190830989SHN3 (shine3)encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e+032Glycine maxGmaAffx.14509.1.S1_atBM523469--3e+0At3g16360AHP4 (HPT PHOSPHOTRANSMITTER 4)C.G.S.X.
0.046e+030Hordeum vulgareContig21877_s_atContig21877--3e+0At1g33940-C.G.S.X.
0.041e+034Oryza sativaOs.23631.1.A1_at---0C.G.S.X.
0.452e-1789Populus trichocarpaPtpAffx.200652.1.S1_atpmrna1268histidine phosphotransfer protein-1e-17At3g16360AHP4 (HPT PHOSPHOTRANSMITTER 4)C.G.S.X.
0.043e+032Triticum aestivumTaAffx.31818.1.S1_atCA607169--3e+0At5g13340unknown proteinC.G.S.X.
0.074e-650Vitis vinifera1606804_atCD800331--2e-5At3g16360AHP4 (HPT PHOSPHOTRANSMITTER 4)C.G.S.X.
0.041e+032Zea maysZmAffx.247.1.A1_atAI670259--8e-1At1g21830unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009736A series of molecular signals induced by the detection of cytokinin.
CGO:0000160A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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