CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g16360

Gene name AHP4 (HPT PHOSPHOTRANSMITTER 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g16360 820883 AHP4 (HPT PHOSPHOTRANSMITTER 4) Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). S.X. H.G.
0.34 39.8 At1g64360 842743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At2g39850 818572 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM S.X. H.G.
0.32 35.7 At1g67870 843115 glycine-rich protein F:unknown;P:biological_process unknown;C:unknown;MOBPFAV S.X. H.G.
0.31 33.8 At1g64370 842744 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBP S.X. H.G.
0.31 33.8 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV S.X. H.G.
0.31 33.8 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO S.X. H.G.
0.30 32.1 At1g22370 838844 AtUGT85A5 (UDP-glucosyl transferase 85A5) F:transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:unknown;PMVBOF S.X. H.G.
0.28 30.3 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF S.X. H.G.
0.28 30.3 At1g18710 838453 AtMYB47 (myb domain protein 47) Member of the R2R3 factor gene family. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
148.3 99.9 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
93.8 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
84.4 99.9 E-MEXP-449-raw-cel-676423253
84.4 99.9 GSM133092 JD AT+EO COL WT EXP2 05D UNINFECTED GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
75.3 99.9 GSM133293 NO.30 GSE5698 AtGenExpress: Cytokinin treatment of seedlings
70.6 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
69.7 99.9 E-MEXP-509-raw-cel-829148561
66.8 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.7 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.6 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 36 At3g45770 823720 oxidoreductase, zinc-binding dehydrogenase family protein F:zinc ion binding, ATP binding;P:oxidation reduction, metabolic process;C:mitochondrion, chloroplast, nucleus;BOFMPA C.G. S.X.
0.02 2e-1 36 At3g13920 820605 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) eukaryotic translation initiation factor 4A-1 C.G. S.X.
0.06 2e-1 36 At2g26865 5007912 - Encodes a Plant thionin family protein C.G. S.X.
0.02 7e-1 34 At4g35470 829699 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:plasma membrane;MPBOFAV C.G. S.X.
0.03 3e+0 32 At5g11190 830989 SHN3 (shine3) encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max GmaAffx.14509.1.S1_at BM523469 - - 3e+0 At3g16360 AHP4 (HPT PHOSPHOTRANSMITTER 4) C.G. S.X.
0.04 6e+0 30 Hordeum vulgare Contig21877_s_at Contig21877 - - 3e+0 At1g33940 - C.G. S.X.
0.04 1e+0 34 Oryza sativa Os.23631.1.A1_at - - - 0 C.G. S.X.
0.45 2e-17 89 Populus trichocarpa PtpAffx.200652.1.S1_at pmrna1268 histidine phosphotransfer protein - 1e-17 At3g16360 AHP4 (HPT PHOSPHOTRANSMITTER 4) C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.31818.1.S1_at CA607169 - - 3e+0 At5g13340 unknown protein C.G. S.X.
0.07 4e-6 50 Vitis vinifera 1606804_at CD800331 - - 2e-5 At3g16360 AHP4 (HPT PHOSPHOTRANSMITTER 4) C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.247.1.A1_at AI670259 - - 8e-1 At1g21830 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009736 A series of molecular signals induced by the detection of cytokinin.
C GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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