CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g16280

Gene name DNA binding / transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g16280 820874 DNA binding / transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.50 65.3 At1g01225 839358 NC domain-containing protein-related F:unknown;P:unknown;C:cellular_component unknown;PBMO S.X. H.G.
0.41 52.4 At1g08960 837416 CAX11 member of Potassium-dependent sodium-calcium exchanger like-family S.X. H.G.
0.41 52.4 At2g17970 816307 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOB S.X. H.G.
0.41 52.4 At4g31150 829243 endonuclease V family protein F:endonuclease activity;P:DNA repair;C:cellular_component unknown;BAOMPF S.X. H.G.
0.36 43.6 At1g31460 840036 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPV S.X. H.G.
0.36 43.6 At5g15790 831435 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFV S.X. H.G.
0.34 39.8 At2g31340 817692 emb1381 (embryo defective 1381) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At3g63290 825504 unknown protein F:molecular_function unknown;P:pollen development;C:cellular_component unknown;FPOB S.X. H.G.
0.33 38.1 At3g18350 821364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
165.9 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
61.7 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
46.9 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.9 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.3 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.7 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.2 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.1 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.4 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.7 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 4e-10 65 At1g77200 844056 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.08 6e-9 61 At4g25490 828653 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. C.G. S.X.
0.07 4e-7 56 At4g25470 828651 CBF2 (C-REPEAT/DRE BINDING FACTOR 2) Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. C.G. S.X.
0.04 2e-5 50 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. C.G. S.X.
0.06 9e-5 48 At1g33760 840267 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.07 6e-3 42 At4g25480 828652 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A) encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. C.G. S.X.
0.01 6e-3 42 At3g53230 824489 cell division cycle protein 48, putative / CDC48, putative F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV C.G. S.X.
0.01 6e-3 42 At3g54230 824590 nucleic acid binding / nucleotide binding / zinc ion binding F:nucleotide binding, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOFPBAV C.G. S.X.
0.04 2e-2 40 At4g13620 826996 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-4 46 Glycine max GmaAffx.84261.1.S1_at BI701092 - - 6e-25 At5g11590 TINY2 (TINY2) C.G. S.X.
0.07 1e-2 40 Hordeum vulgare Contig11552_at Contig11552 - - 1e-13 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.08 4e-2 40 Oryza sativa OsAffx.14299.2.A1_at - - - 0 C.G. S.X.
0.10 1e-13 77 Populus trichocarpa PtpAffx.147208.1.A1_at CV243525 AP2/ERF domain-containing transcription factor - 3e-2 At4g16750 DRE-binding transcription factor, putative C.G. S.X.
0.04 9e-2 38 Triticum aestivum Ta.17561.1.S1_at CA621831 - - 7e-2 At3g16280 DNA binding / transcription factor C.G. S.X.
0.10 1e-1 36 Vitis vinifera 1621270_at CB971990 hypothetical protein LOC100252531 - 4e-4 At5g11590 TINY2 (TINY2) C.G. S.X.
0.05 2e+0 32 Zea mays Zm.9418.1.S1_at AF493799.1 DREB-like protein - 4e-2 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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