CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g15800

Gene name glycosyl hydrolase family 17 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g15800 820823 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PO S.X. H.G.
1.00 100.0 At1g61760 842473 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
1.00 100.0 At3g17380 821002 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
1.00 100.0 At5g48690 834927 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.99 98.1 At2g14620 815950 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO S.X. H.G.
0.99 98.1 At3g10680 820237 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA S.X. H.G.
0.99 98.1 At4g09950 826585 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.99 98.1 At4g12580 826871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB S.X. H.G.
0.99 98.1 At5g25370 832609 PLDALPHA3 (PHOSPHLIPASE D ALPHA 3) member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response. S.X. H.G.
0.99 98.1 At5g48060 834858 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1378.2 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
1257.6 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
1075.0 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
964.9 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
201.0 100.0 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
62.4 99.8 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
24.7 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.1 99.2 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
6.9 98.7 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
5.4 98.3 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 38 At4g04220 825737 AtRLP46 (Receptor Like Protein 46) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.02 1e-1 38 At1g66810 842999 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MOPF C.G. S.X.
0.02 1e-1 38 At1g17665 838343 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMF C.G. S.X.
0.02 6e-1 36 At5g56980 835800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM C.G. S.X.
0.02 6e-1 36 At5g66800 836813 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-8 59 Glycine max Gma.7889.1.A1_at CD394414 - - 8e-9 At4g26830 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.02 7e-2 38 Hordeum vulgare Contig8262_at Contig8262 - - 2e-1 At3g15800 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 3e-1 38 Oryza sativa Os01g0944800 9629.m07089 - Beta-1,3-glucanase precursor 3e-2 At3g57270 BG1 (BETA-1,3-GLUCANASE 1) C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.37866.1.A1_s_at CV235780 hypothetical protein - 1e-1 At4g34480 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.03 6e-1 36 Triticum aestivum TaAffx.92327.1.S1_at BJ270633 - - 9e-1 At5g66815 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1620821_at CD008586 hypothetical protein LOC100242952 - 9e-14 At5g15900 unknown protein C.G. S.X.
0.04 4e+0 32 Zea mays Zm.8484.1.A1_at CD974829 hypothetical protein LOC100279952 - 9e-2 At5g42100 ATBG_PAP C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00436 Callose/glucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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