CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g15540

Gene name IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.26 24.4 At3g15540 820793 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) IAA induced protein 19 S.X. H.G.
0.75 86.9 At1g15580 838128 IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5) auxin induced protein S.X. H.G.
0.67 81.6 At2g23170 816849 GH3.3 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. S.X. H.G.
0.44 57.2 At1g29490 839826 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P S.X. H.G.
0.40 50.8 At1g59500 842240 GH3.4 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
212.6 100.0 E-MEXP-715-raw-cel-1121836221
204.3 100.0 E-MEXP-715-raw-cel-1121836247
190.4 100.0 GSM75514 Col-0 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
183.3 100.0 GSM75510 Col-0 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
162.5 99.9 E-MEXP-715-raw-cel-1121836113
134.8 99.9 E-MEXP-715-raw-cel-1121836361
109.3 99.9 E-MEXP-715-raw-cel-1121836087
98.4 99.9 E-MEXP-715-raw-cel-1121836334
90.5 99.9 E-MEXP-715-raw-cel-1121835979
63.5 99.8 GSM75513 Col-0 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.24 9e-17 87 At1g52830 841717 IAA6 (INDOLE-3-ACETIC ACID 6) An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid. C.G. S.X.
0.13 5e-9 61 At4g14550 827102 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19. C.G. S.X.
0.20 2e-8 59 At1g15580 838128 IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5) auxin induced protein C.G. S.X.
0.15 5e-6 52 At5g43700 834390 ATAUX2-11 (AUXIN INDUCIBLE 2-11) Auxin inducible protein similar to transcription factors. C.G. S.X.
0.04 3e-4 46 At3g23050 821879 IAA7 (INDOLE-3-ACETIC ACID 7) Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. C.G. S.X.
0.10 1e-3 44 At4g14560 827103 IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE) auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein. C.G. S.X.
0.15 5e-3 42 At1g04240 839570 SHY2 (SHORT HYPOCOTYL 2) SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 9e-24 111 Glycine max Gma.17944.1.S1_at AW570024 - - 7e-24 At3g15540 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) C.G. S.X.
0.10 2e-3 42 Hordeum vulgare Contig322_at Contig322 - - 1e-5 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) C.G. S.X.
0.14 2e-4 48 Oryza sativa Os01g0231000 AK066156.1 - Auxin-responsive protein (Aux/IAA) (Fragment) 2e-13 At1g04240 SHY2 (SHORT HYPOCOTYL 2) C.G. S.X.
0.20 1e-13 77 Populus trichocarpa PtpAffx.16882.1.A1_at CV254130 hypothetical protein - 1e-13 At3g15540 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) C.G. S.X.
0.12 8e-5 48 Triticum aestivum Ta.18018.1.S1_at CA627383 - - 1e-9 At1g52830 IAA6 (INDOLE-3-ACETIC ACID 6) C.G. S.X.
0.10 4e-10 63 Vitis vinifera 1610970_at CB343978 - - 1e-63 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) C.G. S.X.
0.07 8e-6 50 Zea mays Zm.4896.1.A1_x_at BM350512 IAA13 - auxin-responsive Aux/IAA family member - 3e-9 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0080086 The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen.
S GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
N GO:0009630 The orientation of plant parts under the stimulation of gravity.
N GO:0009638 The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage