CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g15380

Gene name choline transporter-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g15380 820777 choline transporter-related F:unknown;P:biological_process unknown;C:plasma membrane;MOFP S.X. H.G.
0.60 75.7 At1g12930 837851 importin-related F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.44 57.2 At4g10180 826609 DET1 (DE-ETIOLATED 1) Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling. S.X. H.G.
0.27 26.2 At1g04950 839370 TAF6 (TBP-ASSOCIATED FACTOR 6) Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. S.X. H.G.
0.26 24.4 At3g17750 821043 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA S.X. H.G.
0.21 15.8 At5g02850 831762 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPB S.X. H.G.
0.21 15.8 At1g61010 842393 CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.6 99.6 GSM142632 MC002_ATH1_A4.1-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.8 99.6 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.6 99.6 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.5 99.5 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.9 99.5 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.4 99.5 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.6 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.2 99.4 GSM142661 MB002_ATH1_A1-Eland-ch1 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
15.0 99.4 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
15.0 99.4 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-2 40 At3g20015 821540 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO C.G. S.X.
0.00 3e-1 38 At1g70320 843368 UPL2 (UBIQUITIN-PROTEIN LIGASE 2) encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. C.G. S.X.
0.01 1e+0 36 At5g52060 835281 ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. C.G. S.X.
0.01 1e+0 36 At5g44070 834430 CAD1 (CADMIUM SENSITIVE 1) Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+. C.G. S.X.
0.01 1e+0 36 At5g07320 830623 mitochondrial substrate carrier family protein F:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, membrane;MFPOBV C.G. S.X.
0.02 1e+0 36 At5g48170 834869 SLY2 (SLEEPY2) encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism. C.G. S.X.
0.01 1e+0 36 At5g61810 836303 mitochondrial substrate carrier family protein F:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, membrane;MFPOBV C.G. S.X.
0.01 1e+0 36 At4g37640 829918 ACA2 (CALCIUM ATPASE 2) Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-14 81 Glycine max GmaAffx.65454.1.S1_at BM521435 - - 4e-15 At3g15380 choline transporter-related C.G. S.X.
0.14 3e-8 59 Hordeum vulgare Contig10526_at Contig10526 - - 6e-8 At3g15380 choline transporter-related C.G. S.X.
0.13 7e-25 117 Oryza sativa Os04g0681600 AK105243.1 - Protein of unknown function DUF580 family protein 4e-25 At3g15380 choline transporter-related C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.201068.1.S1_at pmrna2110 hypothetical protein - 8e-1 At5g51940 NRPB6A C.G. S.X.
0.13 8e-11 69 Triticum aestivum Ta.9534.1.A1_at BQ161680 - - 5e-11 At3g15380 choline transporter-related C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1610738_at CB976949 hypothetical protein LOC100267811 - 2e-2 At5g27990 unknown protein C.G. S.X.
0.08 2e-12 73 Zea mays Zm.1397.1.S1_at CF051873 - - 3e-12 At3g15380 choline transporter-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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