Gene omics information

Query gene ID At3g15170
Gene name CUC1 (CUP-SHAPED COTYLEDON1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g15170820748CUC1 (CUP-SHAPED COTYLEDON1)Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.S.X.H.G.
1.00100.0At3g02000820200ROXY1Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).S.X.H.G.
0.6781.6At1g67320843052DNA primase, large subunit familyF:DNA primase activity;P:DNA replication, synthesis of RNA primer;C:alpha DNA polymerase:primase complex;MFOPAS.X.H.G.
0.6075.7At5g66350836767SHI (SHORT INTERNODES)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.S.X.H.G.
0.2217.5At1g18250838405ATLP-1encodes a thaumatin-like proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
2511.5100.0GSM133777Lindsey_1-4_globular-basal_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
113.899.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
80.099.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.899.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.499.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.999.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
52.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.399.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.306e-59228At5g53950835478CUC2 (CUP-SHAPED COTYLEDON 2)Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.C.G.S.X.
0.145e-1375At5g18270831945ANAC087F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.135e-1375At2g24430816979ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PMFC.G.S.X.
0.112e-1273At5g61430836264ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.111e-1067At5g07680830661ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.178e-961At3g18400821369anac058 (Arabidopsis NAC domain containing protein 58)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.153e-963Glycine maxGma.8438.1.S1_atAF532619.1no apical meristem-like protein /// NAC domain protein NAC5-8e-56At5g07680ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)C.G.S.X.
0.063e-1065Hordeum vulgareContig9284_atContig9284--3e-18At3g04060anac046 (Arabidopsis NAC domain containing protein 46)C.G.S.X.
0.104e-963Oryza sativaOs06g03449009634.m02331-No apical meristem (NAM) protein family protein1e-3At1g76420CUC3 (CUP SHAPED COTYLEDON3)C.G.S.X.
0.472e-37157Populus trichocarpaPtpAffx.209952.1.S1_x_atpmrna19626NAC domain protein, IPR003441-7e-38At3g15170CUC1 (CUP-SHAPED COTYLEDON1)C.G.S.X.
0.101e-1067Triticum aestivumTa.25258.1.S1_atCD908196--4e-21At3g04060anac046 (Arabidopsis NAC domain containing protein 46)C.G.S.X.
0.099e-959Vitis vinifera1610480_atCA809362hypothetical protein LOC100254239-3e-9At1g56010NAC1C.G.S.X.
0.031e-240Zea maysZm.5882.1.A1_atAI637237--2e-1At1g52880NAM (NO APICAL MERISTEM)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010160The regionalization process that specifies organ primordium boundaries resulting in a restriction of organogenesis to a limited spatial domain and keeping the organ separate from surrounding tissues.
XGO:0010223The process that gives rise to secondary (or auxiliary or axillary) shoots in plants. This process pertains to the initial formation of a structure from unspecified parts. These secondary shoots originate from secondary meristems initiated in the axils of leaf primordia. Axillary meristems function like the shoot apical meristem of the primary shoot initating the development of lateral organs.
XGO:0051782Any process that stops, prevents or reduces the frequency, rate or extent of cell division.
XGO:0009908The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
XGO:0010014Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue.
XGO:0048467The process whose specific outcome is the progression of the gynoecium over time, from its formation to the mature structure. The gynoecium is the collective name for the carpels of a flower.
XGO:0009790The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
SGO:0010072The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers.
SGO:0048527The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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