CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g15080

Gene name exonuclease family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At3g15080 820738 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPB S.X. H.G.
0.91 95.6 At5g40530 834051 - F:unknown;P:unknown;C:unknown;MOFP S.X. H.G.
0.77 88.0 At5g22840 832347 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.42 53.9 At3g61620 825335 RRP41 exonuclease RRP41 (RRP41) S.X. H.G.
0.40 50.8 At2g31240 817681 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV S.X. H.G.
0.35 41.6 At3g62940 825469 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.1 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
22.7 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.9 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.7 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.1 99.5 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.3 99.4 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
15.0 99.4 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.1 99.4 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.0 99.4 E-MEXP-849-raw-cel-1181981030
13.2 99.4 E-MEXP-849-raw-cel-1181981046
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At3g49610 824123 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PB C.G. S.X.
0.02 1e-1 38 At2g48100 819422 exonuclease family protein F:exonuclease activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFPOB C.G. S.X.
0.02 4e-1 36 At5g19630 832083 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPAF C.G. S.X.
0.02 4e-1 36 At5g66670 836799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 7e-22 105 Glycine max GmaAffx.22440.2.S1_at BG042001 - - 4e-22 At3g15080 exonuclease family protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig17965_at Contig17965 - - 2e-17 At3g15352 ATCOX17 C.G. S.X.
0.03 2e-1 38 Oryza sativa Os08g0377400 AK105467.1 - XPMC2 protein 3e-1 At4g28840 unknown protein C.G. S.X.
0.26 1e-20 101 Populus trichocarpa PtpAffx.118580.1.S1_at CV241289 hypothetical protein - 1e-20 At3g15080 exonuclease family protein C.G. S.X.
0.04 4e-1 36 Triticum aestivum Ta.7464.1.S1_at BJ319947 - - 6e-1 At3g15080 exonuclease family protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1613248_at CF202371.1 - - 4e-3 At3g05590 RPL18 (RIBOSOMAL PROTEIN L18) C.G. S.X.
0.03 3e+0 32 Zea mays Zm.4062.1.A1_at CF972415 peptidyl-prolyl isomerase - 2e-8 At5g48570 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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