CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g15060

Gene name AtRABA1g (Arabidopsis Rab GTPase homolog A1g)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g15060 820735 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) F:GTP binding;P:response to cadmium ion;C:unknown;MOFPBAV S.X. H.G.
0.38 46.7 At3g26020 822199 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative F:protein phosphatase type 2A regulator activity;P:signal transduction;C:protein phosphatase type 2A complex;MOPFB S.X. H.G.
0.38 46.7 At5g53310 835412 myosin heavy chain-related F:motor activity;P:biological_process unknown;C:plasma membrane;MOFP S.X. H.G.
0.37 45.0 At4g24730 828575 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;PBMO S.X. H.G.
0.34 39.8 At3g48070 823962 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MFPOB S.X. H.G.
0.33 38.1 At3g07890 819980 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFP S.X. H.G.
0.31 33.8 At2g02180 814749 TOM3 Necessary for the efficient multiplication of tobamoviruses. S.X. H.G.
0.28 30.3 At1g68580 843187 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein F:RNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.28 30.3 At5g19000 832018 ATBPM1 (BTB-POZ and MATH domain 1) F:protein binding;P:biological_process unknown;C:unknown;MPOF S.X. H.G.
0.28 30.3 At1g02170 839561 AMC1 (METACASPASE 1) Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.8 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.5 99.7 E-MEXP-1443-raw-cel-1581869803
35.6 99.7 E-MEXP-1443-raw-cel-1581869745
29.3 99.7 E-MEXP-1094-raw-cel-1379507273
28.1 99.7 E-MEXP-1094-raw-cel-1379507313
22.3 99.6 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.9 99.6 E-MEXP-1094-raw-cel-1379507513
20.3 99.6 E-MEXP-1094-raw-cel-1379507553
18.7 99.5 E-MEXP-1094-raw-cel-1379507473
17.7 99.5 E-MEXP-1094-raw-cel-1379507193
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.84 1e-127 456 At5g60860 836207 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAV C.G. S.X.
0.64 4e-93 341 At1g28550 839755 AtRABA1i (Arabidopsis Rab GTPase homolog A1i) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA C.G. S.X.
0.33 8e-42 171 At4g18800 827614 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA C.G. S.X.
0.65 3e-41 169 At2g33870 817957 ArRABA1h (Arabidopsis Rab GTPase homolog A1h) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA C.G. S.X.
0.39 5e-37 155 At4g18430 827574 AtRABA1e (Arabidopsis Rab GTPase homolog A1e) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAV C.G. S.X.
0.21 3e-23 109 At1g06400 837151 ARA-2 small GTP-binding protein (ara-2) C.G. S.X.
0.26 4e-22 105 At1g07410 837253 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) F:protein binding, GTP binding, GTPase activity;P:intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBAV C.G. S.X.
0.31 6e-21 101 At5g45750 834614 AtRABA1c (Arabidopsis Rab GTPase homolog A1c) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, nucleus, vacuole;MOFPBAV C.G. S.X.
0.09 6e-18 91 At1g73640 843698 AtRABA6a (Arabidopsis Rab GTPase homolog A6a) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 3e-76 286 Glycine max Gma.15815.1.S1_at CD407076 - - 3e-76 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) C.G. S.X.
0.29 2e-37 155 Hordeum vulgare Contig3165_at Contig3165 - - 2e-28 At1g28550 AtRABA1i (Arabidopsis Rab GTPase homolog A1i) C.G. S.X.
0.45 9e-71 268 Oryza sativa Os05g0564400 AK073075.1 - GTP-binding protein 4e-45 At5g60860 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) C.G. S.X.
0.50 3e-76 286 Populus trichocarpa PtpAffx.9745.1.A1_at CV230310 - - 1e-38 At5g60860 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) C.G. S.X.
0.42 1e-22 107 Triticum aestivum TaAffx.94489.1.S1_at BQ608803 rab GTP-binding protein - 1e-22 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) C.G. S.X.
0.34 5e-65 246 Vitis vinifera 1621911_at CF214080 hypothetical protein LOC100252396 - 3e-64 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) C.G. S.X.
0.32 4e-45 180 Zea mays Zm.16271.2.A1_at AY110109.1 Hypothetical protein LOC100193158 - 2e-28 At5g60860 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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