CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g15050

Gene name IQD10 (IQ-domain 10)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g15050 820734 IQD10 (IQ-domain 10) F:calmodulin binding;P:biological_process unknown;C:chloroplast;P S.X. H.G.
1.00 100.0 At2g29130 817462 LAC2 (laccase 2) putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydration S.X. H.G.
0.98 97.8 At1g22480 838854 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFO S.X. H.G.
0.98 97.8 At1g80170 844357 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMA S.X. H.G.
0.96 97.3 At3g50220 824184 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.94 96.7 At1g32770 840171 ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12) Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques. S.X. H.G.
0.94 96.7 At5g60490 836170 FLA12 F:unknown;P:unknown;C:plasma membrane, anchored to membrane;PBOMAF S.X. H.G.
0.93 96.4 At2g41610 818759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.92 96.0 At1g27380 839627 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. S.X. H.G.
0.92 96.0 At5g03170 831914 FLA11 F:unknown;P:unknown;C:anchored to membrane;PBOMAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
367.3 100.0 E-MEXP-265-raw-cel-414618394
349.2 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
342.9 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
320.0 100.0 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
317.9 100.0 E-MEXP-265-raw-cel-414618291
259.6 100.0 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
250.2 100.0 E-MEXP-265-raw-cel-414618491
185.8 100.0 E-MEXP-265-raw-cel-414618693
176.5 100.0 E-MEXP-265-raw-cel-414618796
153.0 99.9 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 1e-10 67 At2g33990 817960 iqd9 (IQ-domain 9) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;POM C.G. S.X.
0.02 1e-1 38 At3g26440 822248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.01 4e-1 36 At2g29510 817500 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.01 4e-1 36 At1g58260 842194 CYP79C2 (CYTOCHROME P450 79C2) member of CYP79C subfamily of cytochrome p450s. Encodes a putative xylan endohydrolase. similar to some closely linked pseudogenes. C.G. S.X.
0.02 2e+0 34 At4g02800 828171 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA C.G. S.X.
0.03 2e+0 34 At4g28703 828989 - F:molecular_function unknown;P:unknown;C:cellular_component unknown;BOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 6e-4 46 Glycine max Gma.18088.1.S1_at BI970254 - - 6e-3 At2g33990 iqd9 (IQ-domain 9) C.G. S.X.
0.04 2e-4 46 Hordeum vulgare Contig10758_at Contig10758 - - 2e-10 At3g22190 IQD5 (IQ-domain 5) C.G. S.X.
0.03 5e-2 40 Oryza sativa Os06g0155300 AK099462.1 - IQ calmodulin-binding region domain containingprotein 5e-2 At3g15050 IQD10 (IQ-domain 10) C.G. S.X.
0.14 7e-16 85 Populus trichocarpa PtpAffx.1356.2.A1_a_at CK320740 hypothetical protein - 6e-16 At3g15050 IQD10 (IQ-domain 10) C.G. S.X.
0.05 2e+0 34 Triticum aestivum Ta.28819.3.S1_a_at BJ207606 - - 4e-3 At2g33990 iqd9 (IQ-domain 9) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1618346_at CD801523 - - 2e-2 At5g03740 HD2C (HISTONE DEACETYLASE 2C) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.5943.1.A1_at AI665888 - - 3e-1 At5g30510 RPS1 (RIBOSOMAL PROTEIN S1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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