CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g14940

Gene name ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At3g14940 820723 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. S.X. H.G.
0.86 93.1 At2g29750 817525 UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1) F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF S.X. H.G.
0.67 81.6 At3g01190 821314 peroxidase 27 (PER27) (P27) (PRXR7) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.50 65.3 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.40 50.8 At5g66690 836802 UGT72E2 UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
269.8 100.0 GSM184511 Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
85.2 99.9 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
72.6 99.9 GSM184493 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
66.5 99.8 GSM184521 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.8 99.8 E-MEXP-635-raw-cel-912819824
55.0 99.8 GSM184491 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
50.0 99.8 E-MEXP-635-raw-cel-912819840
48.5 99.8 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
47.7 99.8 GSM184489 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
46.4 99.8 GSM184518 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 0 2420 At1g53310 841765 ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. C.G. S.X.
0.63 5e-96 353 At2g42600 818860 ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. C.G. S.X.
0.02 1e-4 50 At3g42628 823279 phosphoenolpyruvate carboxylase-related / PEP carboxylase-related F:phosphoenolpyruvate carboxylase activity;P:tricarboxylic acid cycle;C:cytosol;PB C.G. S.X.
0.05 6e-3 44 At1g68750 843206 ATPPC4 Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. C.G. S.X.
0.01 4e-1 38 At3g19910 821529 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVA C.G. S.X.
0.01 4e-1 38 At2g18960 816413 AHA1 (ARABIDOPSIS H+ ATPASE 1) Encodes a plasma membrane proton ATPase. Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 9e-123 442 Glycine max Gma.62.1.S1_a_at D13998.1 phosphoenolpyruvate carboxylase - 7e-123 At3g14940 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) C.G. S.X.
0.46 1e-76 287 Hordeum vulgare Contig3250_at Contig3250 - - 1e-68 At3g14940 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) C.G. S.X.
0.51 2e-72 276 Oryza sativa Os08g0366000 AY187619.1 - Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31)(PEPCase 2) (CP28) 1e-72 At3g14940 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) C.G. S.X.
0.73 0 1122 Populus trichocarpa PtpAffx.216525.1.S1_at pmrna31356 hypothetical protein - 0 At3g14940 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) C.G. S.X.
0.35 3e-63 244 Triticum aestivum Ta.81.1.S1_at BU099491 phosphoenolpyruvate carboxylase - 2e-43 At1g53310 ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1) C.G. S.X.
0.40 9e-129 460 Vitis vinifera 1611103_at CF215746 hypothetical protein LOC100267525 - 2e-128 At3g14940 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) C.G. S.X.
0.40 9e-65 248 Zea mays Zm.167.1.A1_at CF632910 phosphoenolpyruvate carboxylase - 1e-50 At1g53310 ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006099 A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00120 Phosphoenolpyruvate and Pyruvate metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00620 Pyruvate metabolism
00710 Carbon fixation in photosynthetic organisms
01100 Metabolic pathways
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