CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g14530

Gene name geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.52 67.4 At3g14530 820678 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:chloroplast;OBFPMAV S.X. H.G.
0.88 94.0 At2g43480 818949 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM S.X. H.G.
0.79 89.1 At4g01240 827909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.79 89.1 At5g60520 836173 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.76 87.4 At5g57500 835854 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOF S.X. H.G.
0.76 87.4 At5g66280 836760 GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1) GDP-D-mannose 4,6-dehydratase S.X. H.G.
0.74 86.1 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.74 86.1 At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA S.X. H.G.
0.72 84.8 At1g50720 841494 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM S.X. H.G.
0.69 82.9 At1g14080 837968 FUT6 (FUCOSYLTRANSFERASE 6) member of Xyloglucan fucosyltransferase family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
220.9 100.0 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
207.2 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
201.9 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
177.8 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
175.9 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
175.2 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
171.4 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
170.7 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
164.5 100.0 GSM184907 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
148.8 99.9 GSM266662 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.95 0 1665 At3g14550 820681 GGPS3 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3) Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. C.G. S.X.
0.75 0 1029 At3g14510 820674 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV C.G. S.X.
0.87 0 999 At3g32040 822957 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV C.G. S.X.
0.86 0 960 At3g29430 822604 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV C.G. S.X.
0.15 4e-11 69 At3g29420 822603 geranylgeranyl pyrophosphate synthase-related / GGPP synthetase-related / farnesyltranstransferase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.04 1e-4 48 At2g18620 816377 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFAMV C.G. S.X.
0.06 6e-4 46 At2g23800 816912 GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2) encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase C.G. S.X.
0.16 2e-3 44 At2g18640 816379 GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4) Encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase C.G. S.X.
0.03 1e-1 38 At4g36810 829834 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1) Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-11 71 Glycine max Gma.2365.1.S1_at AW350704 - - 2e-7 At3g14510 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative C.G. S.X.
0.03 3e-1 36 Hordeum vulgare Contig12054_at Contig12054 - - 1e-3 At3g29430 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative C.G. S.X.
0.05 3e-4 48 Oryza sativa OsAffx.23247.1.S1_at - - - 0 C.G. S.X.
0.05 7e-1 36 Populus trichocarpa PtpAffx.202583.1.S1_at pmrna5176 hypothetical protein - 3e-5 At2g18640 GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4) C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.85943.4.S1_at CA622979 - - 5e-15 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial C.G. S.X.
0.11 1e-2 40 Vitis vinifera 1610176_at CB341974 hypothetical protein LOC100266842 - 9e-16 At4g36810 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1) C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.774.1.A1_at AI746198 hypothetical protein LOC100279501 - 2e+0 At2g41000 heat shock protein binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00046 Isoprenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00900 Terpenoid backbone biosynthesis
01062 Biosynthesis of terpenoids and steroids
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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