CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g14440

Gene name NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At3g14440 820667 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane. S.X. H.G.
0.57 73.8 At1g49450 841369 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA S.X. H.G.
0.33 38.1 At1g60190 842314 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, protein binding, binding, zinc ion binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBVA S.X. H.G.
0.33 38.1 At3g63060 825481 EDL3 (EID1-like 3) F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.29 30.3 At1g05100 839324 MAPKKK18 member of MEKK subfamily S.X. H.G.
0.29 30.3 At1g69260 843257 AFP1 (ABI FIVE BINDING PROTEIN) F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
299.1 100.0 E-MEXP-546-raw-cel-863289424
286.4 100.0 E-ATMX-30-raw-cel-1513696906
167.1 100.0 E-MEXP-546-raw-cel-863289532
148.4 99.9 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
124.8 99.9 E-MEXP-546-raw-cel-863289476
124.1 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
123.2 99.9 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
112.5 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
100.6 99.9 E-ATMX-30-raw-cel-1513696808
89.3 99.9 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 3e-71 270 At1g78390 844175 NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. C.G. S.X.
0.16 1e-15 85 At1g30100 839889 NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. C.G. S.X.
0.13 3e-13 77 At4g18350 827562 NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. C.G. S.X.
0.07 4e-3 44 At3g24220 822008 NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6) A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. C.G. S.X.
0.01 6e-2 40 At4g14280 827069 binding F:binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e-1 38 At4g21310 827879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e-1 38 At1g48470 841268 GLN1 Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots. C.G. S.X.
0.01 2e-1 38 At1g25570 839144 leucine-rich repeat protein-related F:protein binding;P:unknown;C:plasma membrane, vacuole;POBMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 6e-12 73 Glycine max Gma.12393.3.S1_at BM085488 - - 1e-12 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HA29G15r_at HA29G15r - - 3e-1 At2g25820 transcription factor C.G. S.X.
0.09 8e-12 73 Oryza sativa Os12g0617400 AK107649.1 - The start codon is not identified. 3e-12 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) C.G. S.X.
0.18 4e-22 107 Populus trichocarpa PtpAffx.216536.1.S1_at pmrna31375 hypothetical protein - 3e-22 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) C.G. S.X.
0.02 6e-2 40 Triticum aestivum Ta.961.2.S1_a_at CA642180 WRKY40 transcription factor - 4e+0 At5g22520 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1612137_s_at CF604545 hypothetical protein LOC100262769 - 3e-1 At3g25850 DC1 domain-containing protein C.G. S.X.
0.07 2e-6 54 Zea mays Zm.463.1.A1_at U95953.1 viviparous14 - 5e-6 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006970 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
X GO:0042538 A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
C GO:0009688 The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00063 Carotenoid and abscisic acid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00906 Carotenoid biosynthesis
01062 Biosynthesis of terpenoids and steroids
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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