Gene omics information

Query gene ID At3g14130
Gene name (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g14130820630(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeF:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:unknown;OBFMPAS.X.H.G.
0.2726.2At1g02680837962TAF13 (TBP-ASSOCIATED FACTOR 13)F:RNA polymerase II transcription factor activity, DNA binding;P:transcription initiation, transcription from RNA polymerase II promoter;C:transcription factor complex;FMPOVS.X.H.G.
0.2217.5At1g73350843670unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;POMFS.X.H.G.
0.135.8At1g17680838344transcription factor-relatedF:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVAS.X.H.G.
0.114.1At5g21010832225ATBPM5 (BTB-POZ and MATH domain 5)F:protein binding;P:biological_process unknown;C:unknown;MPOFVS.X.H.G.
0.114.1At5g58200835932unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPS.X.H.G.
0.092.8At4g34540829605isoflavone reductase family proteinencodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine.S.X.H.G.
0.082.3At3g08020819993protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBS.X.H.G.
0.051.1At5g24450832516unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVS.X.H.G.
0.051.1At5g03415831847DPBEncodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
76.099.9GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
72.199.9GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
68.999.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
65.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.199.8GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
61.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.399.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.899.8GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
50.799.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.9201491At3g14150820632(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeF:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:unknown;OBFMPAC.G.S.X.
0.144e-550At4g18360827563(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeF:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPAC.G.S.X.
0.012e+034At5g35390833500leucine-rich repeat transmembrane protein kinase, putativeEncodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis.C.G.S.X.
0.012e+034At4g01550828144anac069 (Arabidopsis NAC domain containing protein 69)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFC.G.S.X.
0.012e+034At4g18160827541KCO6Encodes AtTPK3 (KCO6), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.AtTPK3 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.071e-242Glycine maxGmaAffx.74224.1.S1_atBQ629600peroxisomal glycolate oxidase-5e-18At4g18360(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.027e-238Hordeum vulgareContig1774_atContig1774--2e-72At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.041e+036Oryza sativaOs07g0152900AK062433.1--2e-11At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.162e-1687Populus trichocarpaPtpAffx.3181.1.S1_atCV260015hypothetical protein-2e-16At3g14150(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.032e+034Triticum aestivumTaAffx.6254.1.S1_atCA689361--4e+0At2g02990RNS1 (RIBONUCLEASE 1)C.G.S.X.
0.026e-134Vitis vinifera1621518_atCF414303hypothetical protein LOC100250245-2e-23At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.076e-548Zea maysZm.12269.2.A1_atAW256119Hypothetical protein LOC100193070-2e-4At3g14130(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00118Link to KaPPA-View 4Glycolate pathway



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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