CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g14130

Gene name (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g14130 820630 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:unknown;OBFMPA S.X. H.G.
0.27 26.2 At1g02680 837962 TAF13 (TBP-ASSOCIATED FACTOR 13) F:RNA polymerase II transcription factor activity, DNA binding;P:transcription initiation, transcription from RNA polymerase II promoter;C:transcription factor complex;FMPOV S.X. H.G.
0.22 17.5 At1g73350 843670 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;POMF S.X. H.G.
0.13 5.8 At1g17680 838344 transcription factor-related F:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA S.X. H.G.
0.11 4.1 At5g21010 832225 ATBPM5 (BTB-POZ and MATH domain 5) F:protein binding;P:biological_process unknown;C:unknown;MPOFV S.X. H.G.
0.11 4.1 At5g58200 835932 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP S.X. H.G.
0.09 2.8 At4g34540 829605 isoflavone reductase family protein encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. S.X. H.G.
0.08 2.3 At3g08020 819993 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFB S.X. H.G.
0.05 1.1 At5g24450 832516 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV S.X. H.G.
0.05 1.1 At5g03415 831847 DPB Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
76.0 99.9 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
72.1 99.9 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
68.9 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
65.7 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.1 99.8 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
61.3 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.3 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.1 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8 99.8 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
50.7 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.92 0 1491 At3g14150 820632 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:unknown;OBFMPA C.G. S.X.
0.14 4e-5 50 At4g18360 827563 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPA C.G. S.X.
0.01 2e+0 34 At5g35390 833500 leucine-rich repeat transmembrane protein kinase, putative Encodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis. C.G. S.X.
0.01 2e+0 34 At4g01550 828144 anac069 (Arabidopsis NAC domain containing protein 69) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF C.G. S.X.
0.01 2e+0 34 At4g18160 827541 KCO6 Encodes AtTPK3 (KCO6), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.AtTPK3 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-2 42 Glycine max GmaAffx.74224.1.S1_at BQ629600 peroxisomal glycolate oxidase - 5e-18 At4g18360 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.02 7e-2 38 Hordeum vulgare Contig1774_at Contig1774 - - 2e-72 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.04 1e+0 36 Oryza sativa Os07g0152900 AK062433.1 - - 2e-11 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.16 2e-16 87 Populus trichocarpa PtpAffx.3181.1.S1_at CV260015 hypothetical protein - 2e-16 At3g14150 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.6254.1.S1_at CA689361 - - 4e+0 At2g02990 RNS1 (RIBONUCLEASE 1) C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1621518_at CF414303 hypothetical protein LOC100250245 - 2e-23 At1g80670 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.07 6e-5 48 Zea mays Zm.12269.2.A1_at AW256119 Hypothetical protein LOC100193070 - 2e-4 At3g14130 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00118 Glycolate pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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