CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g14070

Gene name CAX9 (CATION EXCHANGER 9)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At3g14070 820622 CAX9 (CATION EXCHANGER 9) Involved in cation (K, Na and Mn) homeostasis and transport S.X. H.G.
0.42 53.9 At1g14530 838015 THH1 (TOM THREE HOMOLOG 1) F:virion binding;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.40 50.8 At2g06005 815154 unknown protein Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060. FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time. S.X. H.G.
0.22 17.5 At4g01960 828190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.19 12.7 At5g35410 833502 SOS2 (SALT OVERLY SENSITIVE 2) encodes a member of the CBL-interacting protein kinase family, is a regulatory component controlling plant potassium nutrition S.X. H.G.
0.19 12.7 At4g35500 829702 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.18 11.4 At4g32920 829429 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;BOMPFVA S.X. H.G.
0.15 7.8 At1g15920 838162 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF S.X. H.G.
0.14 6.8 At5g04460 830324 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV S.X. H.G.
0.13 5.8 At4g35940 829749 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
235.6 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
220.7 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
200.2 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
189.0 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
177.5 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
173.4 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
166.8 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
153.7 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
149.6 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
143.7 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 0 747 At1g54115 841851 CCX4 (CATION CALCIUM EXCHANGER 4) Involved in cation (Na and K) homeostasis. C.G. S.X.
0.04 2e-2 42 At5g17850 831653 cation exchanger, putative (CAX8) F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA C.G. S.X.
0.01 6e-2 40 At4g02280 828081 SUS3 (sucrose synthase 3) Encodes a protein with sucrose synthase activity (SUS3). C.G. S.X.
0.01 1e+0 36 At4g35250 829678 vestitone reductase-related F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast;BOPFMA C.G. S.X.
0.01 1e+0 36 At3g25700 822158 chloroplast nucleoid DNA-binding protein-related F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMOF C.G. S.X.
0.01 1e+0 36 At3g07250 819913 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVB C.G. S.X.
0.01 1e+0 36 At1g05790 837088 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:endomembrane system;MPOFB C.G. S.X.
0.01 1e+0 36 At1g08960 837416 CAX11 member of Potassium-dependent sodium-calcium exchanger like-family C.G. S.X.
0.01 1e+0 36 At1g77380 844074 AAP3 Amino acid permease which transports basic amino acids. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-5 50 Glycine max GmaAffx.21223.1.S1_at AW570106 - - 2e-5 At3g14070 CAX9 (CATION EXCHANGER 9) C.G. S.X.
0.06 2e-3 44 Hordeum vulgare Contig12493_at Contig12493 - - 5e-8 At1g54115 CCX4 (CATION CALCIUM EXCHANGER 4) C.G. S.X.
0.07 3e-2 42 Oryza sativa Os03g0180000 CF326916 - Sodium/calcium exchanger membrane region domaincontaining protein 1e-9 At1g54115 CCX4 (CATION CALCIUM EXCHANGER 4) C.G. S.X.
0.03 6e-3 44 Populus trichocarpa PtpAffx.212246.1.S1_at pmrna24008 Ca2+ antiporter/cation exchanger - 5e-1 At5g17850 cation exchanger, putative (CAX8) C.G. S.X.
0.02 6e-2 40 Triticum aestivum Ta.21094.2.S1_at CA611488 - - 4e+0 At1g77290 tetrachloro-p-hydroquinone reductive dehalogenase-related C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1620317_at CF205562.1 - - 8e-8 At5g11070 unknown protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.3284.2.A1_a_at CF631443 - - 5e+0 At5g45750 AtRABA1c (Arabidopsis Rab GTPase homolog A1c) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0030003 Any process involved in the maintenance of an internal equilibrium of cations at the level of a cell.
X GO:0043157 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cation stress, an increase or decrease in the concentration of positively charged ions in the environment.
C GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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