Gene omics information

Query gene ID At3g14060
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g14060820620unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cell wall, cytoplasm;PS.X.H.G.
0.3541.6At3g04070819562anac047 (Arabidopsis NAC domain containing protein 47)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PS.X.H.G.
0.3235.7At2g02390814770ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide.S.X.H.G.
0.2726.2At5g57910835902unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.2522.6At5g58350835947WNK4 (WITH NO K (=LYSINE) 4)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.S.X.H.G.
0.2522.6At2g23450816877protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.2522.6At5g57900835901SKIP1 (SKP1 INTERACTING PARTNER 1)F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent mannerS.X.H.G.
0.2420.7At4g26060828712unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2420.7At1g69410843273ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410.S.X.H.G.
0.2420.7At4g21980828287APG8A (AUTOPHAGY 8A)Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
203.3100.0GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination Study
155.099.9GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
139.699.9GSM128675Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
137.399.9GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responses
121.699.9GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination Study
115.099.9GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
107.599.9E-MEXP-1474-raw-cel-1593932833
102.499.9GSM142845MG001_ATH1_A26-Torres-8N3GSE6176Impact of Type III effectors on plant defense responses
94.999.9E-MEXP-1474-raw-cel-1593932737
87.299.9E-MEXP-1474-raw-cel-1593932545
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.131e-240At1g54120841852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.037e-134At5g61920836313unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;MOFBPAVC.G.S.X.
0.017e-134At4g14280827069bindingF:binding;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.017e-134At3g59820825151calcium-binding mitochondrial protein-relatedF:calcium ion binding;P:unknown;C:mitochondrion;MOFBPAVC.G.S.X.
0.033e+032At5g13180831157ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-136Glycine maxGma.1400.3.S1_s_atBQ253405--4e-1At3g14060unknown proteinC.G.S.X.
0.036e+030Hordeum vulgareContig22222_atContig22222--1e+0At5g64160unknown proteinC.G.S.X.
0.031e+034Oryza sativaOsAffx.20662.1.A1_at---0C.G.S.X.
0.061e+034Populus trichocarpaPtpAffx.209933.1.S1_atpmrna19592hypothetical protein-7e-1At5g57570-C.G.S.X.
0.043e+032Triticum aestivumTa.30652.1.A1_atBE498112at2G04570 protein-9e-1At1g62422unknown proteinC.G.S.X.
0.048e-132Vitis vinifera1618956_atCB343141hypothetical protein LOC100257557-7e-5At5g52250transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.052e-238Zea maysZmAffx.911.1.A1_atAI770952--8e-1At5g42635glycine-rich proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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