CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g14050

Gene name RSH2 (RELA-SPOT HOMOLOG 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At3g14050 820619 RSH2 (RELA-SPOT HOMOLOG 2) F:GTP diphosphokinase activity;P:response to abscisic acid stimulus, response to wounding;C:chloroplast;BOMPFAV S.X. H.G.
0.67 81.6 At2g05940 815147 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.38 46.7 At4g34390 829589 XLG2 (extra-large GTP-binding protein 2) F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB S.X. H.G.
0.33 38.1 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.29 30.3 At1g29690 839846 CAD1 (constitutively activated cell death 1) Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
123.6 99.9 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
87.7 99.9 E-MEXP-807-raw-cel-1173272948
65.2 99.8 E-MEXP-546-raw-cel-863289424
42.1 99.8 E-MEXP-98-raw-cel-320188859
41.0 99.8 E-MEXP-807-raw-cel-1173273252
37.6 99.7 E-MEXP-98-raw-cel-320188804
36.5 99.7 GSM128677 Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
34.6 99.7 GSM142846 MG001_ATH1_A27-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
34.3 99.7 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
33.9 99.7 E-MEXP-546-raw-cel-863289586
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 0 1001 At1g54130 841853 RSH3 (RELA/SPOT HOMOLOG 3) F:GTP diphosphokinase activity;P:guanosine tetraphosphate metabolic process;C:chloroplast;BOMPFAV C.G. S.X.
0.01 2e-2 42 At1g26330 839175 DNA binding F:DNA binding;P:biological_process unknown;C:nucleus;OMPBF C.G. S.X.
0.01 7e-2 40 At5g19260 832046 unknown protein F:unknown;P:unknown;C:unknown;MOFPBV C.G. S.X.
0.01 7e-2 40 At5g25590 832634 - F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVA C.G. S.X.
0.01 7e-2 40 At2g22080 816743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA C.G. S.X.
0.01 3e-1 38 At4g25190 828622 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;OMFBPV C.G. S.X.
0.01 3e-1 38 At3g55150 824681 ATEXO70H1 (exocyst subunit EXO70 family protein H1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 3e-91 337 Glycine max Gma.4228.1.S1_at AI856764 - - 1e-91 At3g14050 RSH2 (RELA-SPOT HOMOLOG 2) C.G. S.X.
0.11 3e-18 93 Hordeum vulgare Contig9702_at Contig9702 - - 2e-8 At1g54130 RSH3 (RELA/SPOT HOMOLOG 3) C.G. S.X.
0.19 1e-23 113 Oryza sativa Os08g0457600 AK065020.1 - RSH2 8e-24 At3g14050 RSH2 (RELA-SPOT HOMOLOG 2) C.G. S.X.
0.31 6e-34 147 Populus trichocarpa PtpAffx.11635.1.S1_at BP931125 hypothetical protein - 2e-34 At3g14050 RSH2 (RELA-SPOT HOMOLOG 2) C.G. S.X.
0.15 1e-9 65 Triticum aestivum Ta.6013.1.S1_at BJ269332 - - 9e-10 At3g14050 RSH2 (RELA-SPOT HOMOLOG 2) C.G. S.X.
0.04 1e-3 44 Vitis vinifera 1615365_at CB973771 hypothetical protein LOC100253158 - 2e-14 At1g54130 RSH3 (RELA/SPOT HOMOLOG 3) C.G. S.X.
0.03 5e-1 36 Zea mays Zm.7011.1.S1_s_at CA398268 hypothetical protein LOC100191203 - 3e-19 At4g21110 G10 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00002 Purine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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