CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g13980

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g13980 820612 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV S.X. H.G.
0.43 55.3 At2g33310 817894 IAA13 Auxin induced gene, IAA13 (IAA13). S.X. H.G.
0.39 48.4 At3g63210 825496 MARD1 encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102 S.X. H.G.
0.37 45.0 At1g76460 843979 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA S.X. H.G.
0.37 45.0 At2g25490 817087 EBF1 (EIN3-BINDING F BOX PROTEIN 1) Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. S.X. H.G.
0.35 41.6 At2g38120 818390 AUX1 (AUXIN RESISTANT 1) Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning. S.X. H.G.
0.35 41.6 At2g03890 814915 phosphatidylinositol 3- and 4-kinase family protein F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB S.X. H.G.
0.33 38.1 At1g75500 843886 nodulin MtN21 family protein F:unknown;P:unknown;C:plasma membrane, membrane;OBPAM S.X. H.G.
0.31 33.8 At2g45670 819175 calcineurin B subunit-related F:calcium ion binding, acyltransferase activity;P:metabolic process;C:unknown;MPBOF S.X. H.G.
0.29 30.3 At1g03380 838702 AtATG18g F:molecular_function unknown;P:response to starvation;C:unknown;MPFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
145.4 99.9 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
121.0 99.9 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
94.6 99.9 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
91.6 99.9 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
85.8 99.9 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
83.5 99.9 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
77.3 99.9 GSM142641 MC002_ATH1_A7.1-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
75.0 99.9 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
62.5 99.8 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
48.0 99.8 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 3e-21 103 At1g54200 841860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB C.G. S.X.
0.05 6e-4 46 At5g12050 831078 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
0.02 3e-2 40 At5g08590 830760 SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1) Encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily. C.G. S.X.
0.02 3e-2 40 At5g48980 834957 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMV C.G. S.X.
0.03 3e-2 40 At3g25716 6241217 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 3e-2 40 At2g36570 818230 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.02 1e-1 38 At5g65530 836679 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 1e-1 38 At5g56200 835719 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBV C.G. S.X.
0.02 1e-1 38 At3g56570 824824 SET domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-17 89 Glycine max Gma.8797.1.A1_at BI969881 - - 4e-15 At3g13980 unknown protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig15492_at Contig15492 - - 1e-1 At3g07600 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 2e-2 42 Oryza sativa Os03g0284700 AK069841.1 - Hypothetical protein 2e+0 At5g35490 unknown protein C.G. S.X.
0.12 5e-2 40 Populus trichocarpa PtpAffx.200488.1.S1_at pmrna983 hypothetical protein - 4e-2 At3g13980 unknown protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.29365.1.S1_at CA644256 - - 1e-2 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related C.G. S.X.
0.04 4e-2 38 Vitis vinifera 1611645_at CB349661 hypothetical protein LOC100252175 - 4e-1 At1g11360 universal stress protein (USP) family protein C.G. S.X.
0.02 9e-1 34 Zea mays ZmAffx.1119.1.A1_at AW267407 hypothetical protein LOC100272789 - 3e+0 At4g33625 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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