Gene omics information

Query gene ID At3g13950
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3133.8At3g13950820608unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PS.X.H.G.
0.7184.2At2g29350817484SAG13senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenaseS.X.H.G.
0.5570.6At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVS.X.H.G.
0.4457.2At2g29470817496ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.4355.3At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseS.X.H.G.
0.4050.8At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.S.X.H.G.
0.4050.8At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.S.X.H.G.
0.3338.1At2g04450814985ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6)F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
58.699.8GSM134369St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
54.899.8GSM134359St.Clair_1-20_361_Cvi-1_0.02%-silwet_Rep2_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
54.199.8GSM250948mil4 overexpression line with BTH treatment, biological rep1GSE9956Expression profiling of the overexpression of MILDEW-INDUCED LESIONS 4
47.099.8GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
45.899.8GSM134405St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1
45.799.8GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
45.599.8GSM131604ATGE_41_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
44.999.8GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
42.399.8GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.113e-756At4g132662745706unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.028e-238At3g53210824487nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;OBPAMC.G.S.X.
0.028e-238At2g44410819048protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVC.G.S.X.
0.023e-136At5g41040834106transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOC.G.S.X.
0.023e-136At4g32980829435ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.C.G.S.X.
0.013e-136At4g03440827920ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPBFVAC.G.S.X.
0.043e-136At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFC.G.S.X.
0.013e-136At1g61080842400proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBOFPVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-138Glycine maxGmaAffx.75119.1.A1_atCD412533--4e-2At3g13950unknown proteinC.G.S.X.
0.041e-136Hordeum vulgareContig3439_s_atContig3439--4e+0At3g60180uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putativeC.G.S.X.
0.032e+034Oryza sativaOsAffx.21291.1.S1_at---0C.G.S.X.
0.034e-136Populus trichocarpaPtpAffx.149393.1.S1_atCN524402hypothetical protein-5e-22At4g29960unknown proteinC.G.S.X.
0.041e+034Triticum aestivumTaAffx.128.1.S1_atAJ613056--6e-3At1g55080unknown proteinC.G.S.X.
0.032e-238Vitis vinifera1611124_atCA818028similar to Probable pyridoxal biosynthesis protein PDX1-5e-60At5g01410RSR4 (REDUCED SUGAR RESPONSE 4)C.G.S.X.
0.032e+032Zea maysZm.8490.1.A1_atCB351020hypothetical protein LOC100277467-4e+0At2g23290AtMYB70 (myb domain protein 70)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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