CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g13790

Gene name ATBFRUCT1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At3g13790 820591 ATBFRUCT1 Encodes a protein with invertase activity. S.X. H.G.
0.25 22.6 At1g03220 838517 extracellular dermal glycoprotein, putative / EDGP, putative F:aspartic-type endopeptidase activity;P:response to salt stress;C:cell wall, plasma membrane, membrane, plant-type cell wall;P S.X. H.G.
0.24 20.7 At4g13180 826932 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:response to arsenic;C:unknown;BOMFPAV S.X. H.G.
0.17 10.2 At5g44380 834464 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAM S.X. H.G.
0.13 5.8 At1g09560 837482 GLP5 (GERMIN-LIKE PROTEIN 5) germin-like protein (GLP5) S.X. H.G.
0.12 4.9 At2g36380 818211 PDR6 F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV S.X. H.G.
0.08 2.3 At4g38540 830011 monooxygenase, putative (MO2) F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.5 99.7 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
32.8 99.7 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.9 99.7 GSM184490 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.2 99.7 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
26.9 99.7 GSM128673 Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
26.3 99.7 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.9 99.6 GSM184484 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
21.8 99.6 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
21.4 99.6 GSM184511 Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.5 99.6 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 2e-26 121 At3g13784 820590 AtcwINV5 (Arabidopsis thaliana cell wall invertase 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA C.G. S.X.
0.31 1e-24 115 At1g55120 841955 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. C.G. S.X.
0.03 9e-7 56 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. C.G. S.X.
0.09 2e-5 52 At3g52600 824426 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA C.G. S.X.
0.05 2e-5 52 At1g62660 842563 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole;BPFOMA C.G. S.X.
0.05 6e-5 50 At2g36190 818191 AtcwINV4 (Arabidopsis thaliana cell wall invertase 4) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-4 48 Glycine max GmaAffx.271.1.S1_at AW350518 - - 1e-4 At3g13790 ATBFRUCT1 C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig7811_s_at Contig7811 fructan 1-exohydrolase precursor - 1e+0 At3g13790 ATBFRUCT1 C.G. S.X.
0.04 2e-3 46 Oryza sativa Os04g0413200 AK120779.1 - Cell wall invertase 2 2e-8 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
0.07 2e-5 52 Populus trichocarpa PtpAffx.163561.1.S1_at BU879414 hypothetical protein - 3e-23 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
0.07 1e-2 42 Triticum aestivum Ta.198.1.S1_at AF030420.1 cell wall invertase - 2e-2 At3g13790 ATBFRUCT1 C.G. S.X.
0.02 4e-6 52 Vitis vinifera 1611027_at CB978747 cell wall apoplastic invertase - 1e-6 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
0.01 4e-1 36 Zea mays Zm.1497.1.S1_at AF050631.1 miniature seed1 - 2e-11 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00022 Biosynthesis and metabolism of sucrose
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00052 Galactose metabolism
00500 Starch and sucrose metabolism
01100 Metabolic pathways
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