CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g13784

Gene name AtcwINV5 (Arabidopsis thaliana cell wall invertase 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g13784 820590 AtcwINV5 (Arabidopsis thaliana cell wall invertase 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA S.X. H.G.
0.50 65.3 At5g21120 832237 EIL2 (ETHYLENE-INSENSITIVE3-LIKE 2) ethylene-insensitive3-like2 (EIL2) S.X. H.G.
0.40 50.8 At4g04690 825802 F-box family protein (FBX15) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PO S.X. H.G.
0.25 22.6 At5g11870 831060 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP S.X. H.G.
0.25 22.6 At5g49310 834991 IMPA-5 (IMPORTIN ALPHA ISOFORM 5) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. S.X. H.G.
0.20 14.4 At4g15730 827251 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
0.18 11.4 At4g13740 - - - S.X. H.G.
0.05 1.1 At4g35690 829721 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
195.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
178.5 100.0 GSM131326 AtGen_6-3522_Saltstress-Roots-12.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
159.1 99.9 GSM131330 AtGen_6-3622_Saltstress-Roots-24.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
157.0 99.9 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
153.2 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
142.4 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
139.5 99.9 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
133.3 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
133.1 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
126.2 99.9 GSM131305 AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 2e-26 121 At3g13790 820591 ATBFRUCT1 Encodes a protein with invertase activity. C.G. S.X.
0.29 3e-16 87 At1g55120 841955 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. C.G. S.X.
0.03 2e-8 61 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. C.G. S.X.
0.05 2e-4 48 At1g62660 842563 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole;BPFOMA C.G. S.X.
0.02 9e-4 46 At2g36190 818191 AtcwINV4 (Arabidopsis thaliana cell wall invertase 4) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA C.G. S.X.
0.02 2e-1 38 At3g52600 824426 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-5 52 Glycine max Gma.16814.1.S1_at AJ563368.1 beta-fructofuranosidase - 1e-9 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare EBro08_SQ002_C24_at EBro08_SQ002_C24 - - 1e+0 At4g20390 integral membrane family protein C.G. S.X.
0.02 3e-2 42 Oryza sativa Os10g0132300 AK111282.1 - Jacalin-related lectin domain containing protein 7e+0 At5g11840 unknown protein C.G. S.X.
0.03 5e-3 44 Populus trichocarpa PtpAffx.206673.1.S1_at pmrna13241 hypothetical protein - 1e-2 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.9569.2.A1_at BE515404 - - 3e-1 At3g18518 RTFL20 (ROTUNDIFOLIA LIKE 20) C.G. S.X.
0.03 1e-3 44 Vitis vinifera 1611027_at CB978747 cell wall apoplastic invertase - 1e-6 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
0.01 4e-1 36 Zea mays Zm.4472.1.A1_at BG266227 hypothetical protein LOC100194169 - 2e+0 At5g50175 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00022 Biosynthesis and metabolism of sucrose
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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