CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g13760

Gene name DC1 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g13760 820585 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO S.X. H.G.
0.75 86.9 At1g73270 843661 scpl6 (serine carboxypeptidase-like 6) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.61 76.7 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.59 74.7 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.56 73.0 At1g07560 837270 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.53 68.6 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA S.X. H.G.
0.53 68.6 At4g15380 827204 CYP705A4 member of CYP705A S.X. H.G.
0.52 67.4 At2g35270 818094 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA S.X. H.G.
0.50 65.3 At1g68940 843228 armadillo/beta-catenin repeat protein-related / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFV S.X. H.G.
0.49 63.5 At3g49860 824148 ATARLA1B (ADP-ribosylation factor-like A1B) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
110.4 99.9 GSM260880 Yap_A1-AMF GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
73.1 99.9 GSM260881 Yap_A2-AMF GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
60.7 99.8 E-MEXP-828-raw-cel-1156922905
58.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.9 99.8 E-MEXP-828-raw-cel-1156922296
52.6 99.8 E-MEXP-828-raw-cel-1156922923
49.9 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.8 99.8 GSM157326 Hammond_3-10_Control-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
48.0 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.9 99.8 E-MEXP-828-raw-cel-1156922368
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 7e-162 571 At1g35610 840457 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;POM C.G. S.X.
0.22 1e-36 155 At5g17960 831663 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.14 6e-33 143 At3g11370 820309 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFOM C.G. S.X.
0.26 9e-32 139 At3g11385 2745880 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POBMFV C.G. S.X.
0.22 2e-29 131 At3g11402 820312 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.22 2e-26 121 At3g11390 820311 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBV C.G. S.X.
0.24 2e-20 101 At2g17590 816266 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFM C.G. S.X.
0.27 3e-19 97 At2g17600 816267 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POM C.G. S.X.
0.23 1e-18 95 At3g59120 825081 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 38 Glycine max Gma.9176.1.S1_at CA802590 - - 2e-2 At3g50740 UGT72E1 (UDP-glucosyl transferase 72E1) C.G. S.X.
0.01 7e+0 32 Hordeum vulgare Contig13164_at Contig13164 - - 2e+0 At5g60553 - C.G. S.X.
0.01 2e+0 36 Oryza sativa Os04g0357300 AK102855.1 - Helicase-like protein [Oryza sativa (japonicacultivar-group)] 5e+0 At5g05720 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.143754.2.S1_at BU872424 hypothetical protein - 3e-1 At2g16005 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.02 7e-2 40 Triticum aestivum TaAffx.86016.1.S1_x_at CA617594 - - 2e+1 Atcg00140 - C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1621781_at BQ793396 - - 2e+0 At5g43260 chaperone protein dnaJ-related C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6569.4.A1_a_at AY112282.1 40S ribosomal protein S15 - 8e-39 At5g09510 40S ribosomal protein S15 (RPS15D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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