Gene omics information

Query gene ID At3g13730
Gene name CYP90D1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3032.1At3g13730820582CYP90D1Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the conversion of cathasterone (CT) to TE, and/or 6-deoxocathasterone (6-deoxoCT) to 6-deoxoTE. Recently, CYP90D1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Member of the CYP90C CYP450 family. Similar to Cytochrome P450 90C1 (ROT3).S.X.H.G.
0.2319.3At5g38280833810PR5Kputative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinaseS.X.H.G.
0.2014.4At1g20700838660WOX14 (WUSCHEL RELATED HOMEOBOX 14)Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state.S.X.H.G.
0.1710.2At4g01440826697nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BPOAMS.X.H.G.
0.114.1At5g57840835894transferase family proteinencodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
120.099.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
114.399.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
96.899.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
88.999.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
87.699.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.999.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.799.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.599.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.499.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
83.899.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-344At2g23100816842DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVAC.G.S.X.
0.022e-138At5g63880836508VPS20.1F:unknown;P:vesicle-mediated transport, N-terminal protein myristoylation;C:ESCRT III complex, plasma membrane;MOFPBAVC.G.S.X.
0.022e-138At3g53310824499transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPVC.G.S.X.
0.022e-138At3g44460823571DPBF2basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons.C.G.S.X.
0.022e-138At1g25330839117basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFC.G.S.X.
0.017e-136At5g13690831214alpha-N-acetylglucosaminidase family / NAGLU familyF:alpha-N-acetylglucosaminidase activity;P:unknown;C:vacuole;BMOPFC.G.S.X.
0.017e-136At5g58040835916ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V])Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase. Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein. It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA.C.G.S.X.
0.017e-136At4g24170828517kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPVAC.G.S.X.
0.017e-136At4g21760828264BGLU47 (Beta-glucosidase 47)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-1481Glycine maxGmaAffx.82081.1.S1_atAW395980--9e-15At3g13730CYP90D1C.G.S.X.
0.021e+034Hordeum vulgareHM07K04r_atHM07K04r--2e-1At3g13480unknown proteinC.G.S.X.
0.024e-138Oryza sativaOsAffx.4615.1.S1_at---0C.G.S.X.
0.173e-1997Populus trichocarpaPtpAffx.60955.1.S1_s_atDN502052cytochrome P450 probable 6-deoxoteasterone to 3-dehydro 6-deoxoteasterone or teasterone to 3-dehydro teasterone-1e-19At3g13730CYP90D1C.G.S.X.
0.038e-136Triticum aestivumTaAffx.91913.1.S1_atBJ299446--5e-1At1g18800NRP2 (NAP1-RELATED PROTEIN 2)C.G.S.X.
0.026e-238Vitis vinifera1611400_atCF510785hypothetical protein LOC100266087-1e+0At5g30520unknown proteinC.G.S.X.
0.023e-136Zea maysZm.6552.1.A1_atAI649639--8e-1At3g13730CYP90D1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048366The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
XGO:0048441The process whose specific outcome is the progression of the petal over time, from its formation to the mature structure.
XGO:0048443The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure.
XGO:0016132The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00347Link to KaPPA-View 4Cytochrome P450



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00905Link to KEGG PATHWAYBrassinosteroid biosynthesis
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