CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g13672

Gene name seven in absentia (SINA) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At3g13672 820573 seven in absentia (SINA) family protein F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO S.X. H.G.
0.60 75.7 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB S.X. H.G.
0.48 62.5 At2g25625 817103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.44 57.2 At2g46680 819280 ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response. S.X. H.G.
0.36 43.6 At3g61890 825362 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. S.X. H.G.
0.35 41.6 At3g57680 824937 peptidase S41 family protein F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM S.X. H.G.
0.35 41.6 At5g59220 836040 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
409.1 100.0 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
244.9 100.0 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
229.0 100.0 GSM131304 AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
216.9 100.0 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
191.3 100.0 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
174.2 100.0 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
168.4 100.0 GSM268245 dor-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
161.5 99.9 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
149.4 99.9 GSM268249 dor-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
131.5 99.9 GSM131300 AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-3 44 At4g16420 827336 ADA2B (HOMOLOG OF YEAST ADA2 2B) Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations. C.G. S.X.
0.03 3e-1 36 At4g08868 3770198 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown C.G. S.X.
0.01 3e-1 36 At2g46450 819253 ATCNGC12 Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner. C.G. S.X.
0.02 3e-1 36 At2g39490 818534 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 1e+0 34 At5g63910 836512 FCLY (FARNESYLCYSTEINE LYASE) encodes for a farnesylcysteine lyase (EC 1.8.3.5 - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate. C.G. S.X.
0.03 1e+0 34 At3g60550 825226 CYCP3 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-1 38 Glycine max GmaAffx.51723.1.A1_at BU549842 - - 1e-16 At2g41980 seven in absentia (SINA) family protein C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HVSMEm0005P05r2_at HVSMEm0005P05r2 - - 1e+0 At3g59880 unknown protein C.G. S.X.
0.05 1e+1 32 Oryza sativa OsAffx.9563.1.S1_at - - - 0 C.G. S.X.
0.14 3e-2 40 Populus trichocarpa Ptp.254.1.S1_at CX654073 hypothetical protein - 2e-2 At3g13672 seven in absentia (SINA) family protein C.G. S.X.
0.03 3e-1 36 Triticum aestivum Ta.2554.3.A1_at CA726606 - - 3e-1 At3g13672 seven in absentia (SINA) family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1622524_at CA811253 hypothetical protein LOC100254356 - 4e-9 At2g24830 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.540.1.S1_at AI711844 - - 2e-1 At4g25400 basix helix-loop-helix (bHLH) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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