CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g13660

Gene name disease resistance response

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.92 96.0 At3g13660 820570 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At2g32460 817807 MYB101 Member of the R2R3 factor gene family. S.X. H.G.
0.72 84.8 At2g26850 817226 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO S.X. H.G.
0.71 84.2 At4g24640 828566 APPB1 Encodes AppB protein (AppB1). S.X. H.G.
0.71 84.2 At3g26110 822209 - F:molecular_function unknown;P:unknown;C:anchored to membrane;P S.X. H.G.
0.71 84.2 At5g46770 834720 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.71 84.2 At3g19310 821465 phospholipase C/ phosphoric diester hydrolase F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM S.X. H.G.
0.69 82.9 At4g04980 825839 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA S.X. H.G.
0.69 82.9 At4g39610 830115 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB S.X. H.G.
0.69 82.9 At3g25165 822108 RALFL25 (ralf-like 25) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
316.8 100.0 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
258.2 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
247.0 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
206.0 100.0 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
184.5 100.0 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
164.5 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
147.4 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
134.9 99.9 E-MEXP-1138-raw-cel-1432772714
129.4 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
126.8 99.9 E-MEXP-1138-raw-cel-1432772970
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.59 2e-56 218 At5g49040 834963 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.39 2e-47 188 At3g13662 820571 - F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.39 1e-39 163 At3g13650 820569 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.37 2e-29 129 At1g55210 841964 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.07 2e-1 36 At1g58170 842184 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:N-terminal protein myristoylation, lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.01 7e-1 34 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. C.G. S.X.
0.01 3e+0 32 At5g08600 830761 U3 ribonucleoprotein (Utp) family protein F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;OMFBPVA C.G. S.X.
0.02 3e+0 32 At5g20560 832178 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-6 54 Glycine max Gma.16548.1.S1_at CD405202 - - 1e-4 At1g55210 disease resistance response C.G. S.X.
0.03 6e+0 30 Hordeum vulgare HVSMEg0005B12r2_at HVSMEg0005B12r2 - - 1e+0 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) C.G. S.X.
0.03 6e+0 32 Oryza sativa Os04g0156800 9632.m00655 - - 8e-2 At5g54410 unknown protein C.G. S.X.
0.11 4e-9 61 Populus trichocarpa PtpAffx.154149.1.A1_at CV251260 hypothetical protein - 1e-13 At1g58170 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.105323.1.S1_at CA736118 - - 3e+0 At3g13660 disease resistance response C.G. S.X.
0.06 1e-2 38 Vitis vinifera 1619111_s_at CF373818 hypothetical protein LOC100246882 /// hypothetical protein LOC100258868 /// hypothetical protein LOC100253717 - 6e-2 At3g13660 disease resistance response C.G. S.X.
0.04 1e+0 32 Zea mays Zm.1264.1.S1_at CD963414 hypothetical protein LOC100278564 - 3e+0 At5g59060 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
C GO:0009807 The chemical reactions and pathways resulting in the formation of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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