Gene omics information

Query gene ID At3g13540
Gene name ATMYB5 (MYB DOMAIN PROTEIN 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2522.6At3g13540820556ATMYB5 (MYB DOMAIN PROTEIN 5)Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).S.X.H.G.
0.6781.6At1g49800841403unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6781.6At4g32170829349CYP96A2member of CYP96AS.X.H.G.
0.5570.6At5g47350834782palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOS.X.H.G.
0.3338.1At2g38900818474serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
570.0100.0GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
462.7100.0GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
330.1100.0GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
150.399.9GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
142.399.9E-ATMX-33-raw-cel-1562596241
134.599.9GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
126.399.9E-ATMX-33-raw-cel-1562596197
103.299.9E-ATMX-33-raw-cel-1562596174
96.599.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
85.699.9GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.082e-859At4g17785827500MYB39 (myb domain protein 39)Encodes a putative transcription factor (MYB39).C.G.S.X.
0.081e-757At4g09460826530ATMYB6Encodes myb6 DNA-binding protein.C.G.S.X.
0.044e-756At3g28910822525MYB30 (MYB DOMAIN PROTEIN 30)transcription factor myb homologueC.G.S.X.
0.052e-654At5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).C.G.S.X.
0.042e-654At5g16600831522MYB43 (myb domain protein 43)Encodes a putative transcription factor (MYB43).C.G.S.X.
0.072e-654At4g05100825855AtMYB74 (myb domain protein 74)Member of the R2R3 factor gene family.C.G.S.X.
0.062e-654At1g35515840446HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10)Encodes a nuclear localized R2R3-type MYB transcription factor that is involved in responses to abiotic stress including cold acclimation,osmotic and salt stress.Mutants are sensitive to salt, freezing and osmotic stress.C.G.S.X.
0.086e-652At3g23250821904MYB15 (MYB DOMAIN PROTEIN 15)Member of the R2R3 factor gene family.C.G.S.X.
0.052e-550At4g34990829651AtMYB32 (myb domain protein 32)Member of the R2R3 factor gene family.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.071e-448Glycine maxGmaAffx.26767.1.S1_atBF010276MYB transcription factor MYB71-1e-42At5g57620MYB36 (myb domain protein 36)C.G.S.X.
0.047e-134Hordeum vulgareContig5841_atContig5841--4e-6At3g23250MYB15 (MYB DOMAIN PROTEIN 15)C.G.S.X.
0.102e-1067Oryza sativaOs01g0695900D88620.1-OSMYB42e-10At3g13540ATMYB5 (MYB DOMAIN PROTEIN 5)C.G.S.X.
0.296e-1375Populus trichocarpaPtp.3325.1.S1_atDN500008hypothetical protein-5e-13At3g13540ATMYB5 (MYB DOMAIN PROTEIN 5)C.G.S.X.
0.032e-344Triticum aestivumTaAffx.117149.1.S1_atCA599744--9e-3At5g06100MYB33 (MYB DOMAIN PROTEIN 33)C.G.S.X.
0.132e-652Vitis vinifera1621471_s_atAB073015.1Myb transcription factor-1e-6At3g13540ATMYB5 (MYB DOMAIN PROTEIN 5)C.G.S.X.
0.112e-756Zea maysZm.13246.1.S1_atAY135019.1PL transcription factor-5e-7At3g13540ATMYB5 (MYB DOMAIN PROTEIN 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010090The process by which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana.
XGO:0010214The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.
XGO:0010468Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
XGO:0048354The chemical reactions and pathways resulting in the formation of mucilage that occur during seed coat development; mucilage is normally synthesized during seed coat development.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
NGO:0010026The process whereby a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana.
NGO:0009845The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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