Gene omics information

Query gene ID At3g13480
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g13480820550unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POS.X.H.G.
0.3846.7At3g24030821988hydroxyethylthiazole kinase family proteinF:catalytic activity, hydroxyethylthiazole kinase activity;P:thiamin biosynthetic process;C:cellular_component unknown;BOFAPMS.X.H.G.
0.3643.6At1g05030839340hexose transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:mitochondrion, integral to membrane, membrane;BMFOPAS.X.H.G.
0.3439.8At3g56840824851FAD-dependent oxidoreductase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPVS.X.H.G.
0.3338.1At3g29760822663NLI interacting factor (NIF) family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVS.X.H.G.
0.3235.7At4g18230827549-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFMOPAS.X.H.G.
0.3032.1At1g75370843873SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putativeF:transporter activity;P:transport;C:plasma membrane;MPFOS.X.H.G.
0.3032.1At5g10700830935aminoacyl-tRNA hydrolase/ protein tyrosine phosphataseF:aminoacyl-tRNA hydrolase activity, protein tyrosine phosphatase activity;P:protein amino acid dephosphorylation, translation;C:unknown;MOPFS.X.H.G.
0.2930.3At3g12300820410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOPFS.X.H.G.
0.2830.3At4g10170826608synaptobrevin-related family proteinF:molecular_function unknown;P:transport, vesicle-mediated transport;C:plasma membrane;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
118.399.9E-MEXP-509-raw-cel-829148703
12.799.3GSM133721Deeken_A-1-Deeke-Tum_SLD_REP2GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
12.299.3E-MEXP-509-raw-cel-829148666
11.299.2E-MEXP-509-raw-cel-829148348
10.199.2E-MEXP-509-raw-cel-829148165
10.099.2GSM38668NSNPGSE2268Arabidopsis polysome microarray
9.499.1GSM142599BD001_ATH1_A3-DAVIE-T13GSE6149Targets of the mci genes.
9.399.1GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.299.1E-MEXP-509-raw-cel-829148842
9.199.1E-MEXP-509-raw-cel-829148913
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.245e-1581At1g554752745831unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMC.G.S.X.
0.013e-446At1g11950837747transcription factorF:transcription factor activity;P:unknown;C:unknown;MPOFC.G.S.X.
0.031e-344At1g12490837806F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.052e-240At5g59510836070RTFL5 (ROTUNDIFOLIA LIKE 5)F:molecular_function unknown;P:shoot development;C:cellular_component unknown;PMFOBC.G.S.X.
0.012e-240At5g16900831553leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.012e-240At4g18150827540unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBC.G.S.X.
0.022e-240At2g28650817414ATEXO70H8 (exocyst subunit EXO70 family protein H8)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.C.G.S.X.
0.042e-240At1g12830837839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.016e-238At4g17410827452zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:nucleus;MFOPBVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-342Glycine maxGmaAffx.81987.1.S1_atBG882226--3e-3At3g13480unknown proteinC.G.S.X.
0.043e-238Hordeum vulgareContig6782_atContig6782--6e-1At5g41660unknown proteinC.G.S.X.
0.041e-138Oryza sativaOs12g04604009640.m02640--1e-3At1g70470unknown proteinC.G.S.X.
0.112e-550Populus trichocarpaPtpAffx.200017.1.S1_s_atpmrna26hypothetical protein-1e-5At3g13480unknown proteinC.G.S.X.
0.073e-136Triticum aestivumTa.23421.1.A1_atBG904697--2e-1At3g13480unknown proteinC.G.S.X.
0.043e-134Vitis vinifera1610280_atBQ795259--2e-1At2g19820LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9)C.G.S.X.
0.034e-134Zea maysZm.12478.1.A1_atCF043347--7e-2At5g40630ubiquitin family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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