CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g13470

Gene name chaperonin, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g13470 820549 chaperonin, putative F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAV S.X. H.G.
0.50 65.3 At2g28000 817344 CPN60A (CHAPERONIN-60ALPHA) Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development. S.X. H.G.
0.44 57.2 At4g24280 828531 cpHsc70-1 (chloroplast heat shock protein 70-1) F:ATP binding;P:protein folding, response to cadmium ion, response to cold, response to heat;C:in 7 components;OBMFPVA S.X. H.G.
0.40 50.8 At5g49910 835054 CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2) heat shock protein 70 (Hsc70-7); nuclear S.X. H.G.
0.25 22.6 At1g55490 841996 CPN60B (CHAPERONIN 60 BETA) encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.5 99.8 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.1 99.7 GSM131452 AtGen_6-9312_Heatstress-Shoots-3.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
30.7 99.7 GSM131451 AtGen_6-9311_Heatstress-Shoots-3.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
26.4 99.7 GSM131447 AtGen_6-9211_Heatstress-Shoots-1.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
25.7 99.7 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.7 99.7 E-MEXP-98-raw-cel-320188969
25.6 99.7 GSM131456 AtGen_6-9812_Heatstress(3h)+1hrecovery-Shoots-4.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
23.4 99.6 GSM131448 AtGen_6-9212_Heatstress-Shoots-1.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
22.7 99.6 GSM131455 AtGen_6-9811_Heatstress(3h)+1hrecovery-Shoots-4.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
20.7 99.6 E-MEXP-1725-raw-cel-1669614623
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.84 0 1818 At1g55490 841996 CPN60B (CHAPERONIN 60 BETA) encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro. C.G. S.X.
0.61 3e-74 280 At5g56500 835751 ATP binding / protein binding F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAV C.G. S.X.
0.04 2e-4 48 At2g28000 817344 CPN60A (CHAPERONIN-60ALPHA) Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development. C.G. S.X.
0.09 4e-3 44 At1g26230 839164 chaperonin, putative F:protein binding, ATP binding;P:cellular protein metabolic process;C:chloroplast;BOMFPAV C.G. S.X.
0.02 6e-2 40 At4g25130 828616 peptide methionine sulfoxide reductase, putative F:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:chloroplast stroma, chloroplast;OBMPFAV C.G. S.X.
0.01 6e-2 40 At1g24430 839059 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF C.G. S.X.
0.01 2e-1 38 At5g58280 835940 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;P C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 2e-91 337 Glycine max Gma.5794.1.S1_a_at CD400361 - - 1e-84 At5g56500 ATP binding / protein binding C.G. S.X.
0.40 2e-40 167 Hordeum vulgare Contig7090_s_at Contig7090 - - 5e-40 At3g13470 chaperonin, putative C.G. S.X.
0.53 1e-69 266 Oryza sativa Os06g0114000 AK101334.1 - RuBisCO subunit binding-protein beta subunit (60kDa chaperonin beta subunit) (CPN-60 beta) (Fragment) 6e-70 At3g13470 chaperonin, putative C.G. S.X.
0.47 8e-116 418 Populus trichocarpa PtpAffx.15237.1.S1_a_at CV236833 - - 4e-116 At3g13470 chaperonin, putative C.G. S.X.
0.51 1e-76 287 Triticum aestivum Ta.9305.1.S1_at BJ283294 - - 5e-111 At1g55490 CPN60B (CHAPERONIN 60 BETA) C.G. S.X.
0.50 8e-94 343 Vitis vinifera 1609111_at CF207933 hypothetical protein LOC100263832 - 2e-93 At3g13470 chaperonin, putative C.G. S.X.
0.54 5e-56 218 Zea mays Zm.3461.2.A1_a_at AI966852 RuBisCo subunit binding-protein beta subunit - 1e-55 At3g13470 chaperonin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
L GO:0044267 The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes protein modification.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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