CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g13222

Gene name GIP1 (GBF-INTERACTING PROTEIN 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.92 96.0 At3g13222 820513 GIP1 (GBF-INTERACTING PROTEIN 1) Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root. S.X. H.G.
0.30 32.1 At5g65180 836642 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV S.X. H.G.
0.29 30.3 At1g73720 843707 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV S.X. H.G.
0.29 30.3 At3g60740 825245 TTN1 (TITAN 1) Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization. S.X. H.G.
0.27 26.2 At1g77470 844083 replication factor C 36 kDA, putative F:in 6 functions;P:DNA replication;C:DNA replication factor C complex;BOMFAPV S.X. H.G.
0.25 22.6 At3g17450 821009 hAT dimerisation domain-containing protein F:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFB S.X. H.G.
0.20 14.4 At1g61010 842393 CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
82.7 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
80.8 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.7 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.4 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
33.1 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.9 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.8 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.0 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.0 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.9 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 2e-23 111 At1g55820 842032 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.02 9e-4 46 At4g18150 827540 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB C.G. S.X.
0.02 8e-1 36 At3g10790 820248 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.01 8e-1 36 At3g24320 822021 MSH1 (MUTL PROTEIN HOMOLOG 1) Promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation. C.G. S.X.
0.01 3e+0 34 At5g53020 835381 unknown protein F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-3 46 Glycine max Gma.15590.1.S1_at BE346550 - - 1e+0 At1g15590 - C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HD07M18r_at HD07M18r - - 7e-1 At3g29370 unknown protein C.G. S.X.
0.02 7e+0 34 Oryza sativa Os08g0351400 9636.m02585 - - 3e-3 At3g56810 unknown protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.210640.1.S1_at pmrna20869 hypothetical protein - 6e-1 At3g55672 - C.G. S.X.
0.02 6e-2 40 Triticum aestivum TaAffx.91814.1.S1_at BJ301796 - - 1e+0 At4g25890 60S acidic ribosomal protein P3 (RPP3A) C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1620023_at CF204115.1 - - 1e+0 At2g29605 unknown protein C.G. S.X.
0.01 1e+0 34 Zea mays Zm.13226.1.A1_at CF022192 hydrogen-transporting ATP synthase, rotational mechanism - 1e-1 At4g29480 mitochondrial ATP synthase g subunit family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0043388 Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process by which a gene product interacts selectively with DNA (deoxyribonucleic acid).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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