Gene omics information

Query gene ID At3g13222
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9296.0At3g13222820513GIP1 (GBF-INTERACTING PROTEIN 1)Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root.S.X.H.G.
0.3032.1At5g65180836642-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAVS.X.H.G.
0.2930.3At1g73720843707transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAVS.X.H.G.
0.2930.3At3g60740825245TTN1 (TITAN 1)Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.S.X.H.G.
0.2726.2At1g77470844083replication factor C 36 kDA, putativeF:in 6 functions;P:DNA replication;C:DNA replication factor C complex;BOMFAPVS.X.H.G.
0.2522.6At3g17450821009hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFBS.X.H.G.
0.2014.4At1g61010842393CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPVS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
82.799.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
80.899.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
36.499.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
31.999.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.272e-23111At1g55820842032-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVC.G.S.X.
0.029e-446At4g18150827540unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBC.G.S.X.
0.028e-136At3g10790820248F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POC.G.S.X.
0.018e-136At3g24320822021MSH1 (MUTL PROTEIN HOMOLOG 1)Promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation.C.G.S.X.
0.013e+034At5g53020835381unknown proteinF:unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-346Glycine maxGma.15590.1.S1_atBE346550--1e+0At1g15590-C.G.S.X.
0.022e+034Hordeum vulgareHD07M18r_atHD07M18r--7e-1At3g29370unknown proteinC.G.S.X.
0.027e+034Oryza sativaOs08g03514009636.m02585--3e-3At3g56810unknown proteinC.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.210640.1.S1_atpmrna20869hypothetical protein-6e-1At3g55672-C.G.S.X.
0.026e-240Triticum aestivumTaAffx.91814.1.S1_atBJ301796--1e+0At4g2589060S acidic ribosomal protein P3 (RPP3A)C.G.S.X.
0.013e-136Vitis vinifera1620023_atCF204115.1--1e+0At2g29605unknown proteinC.G.S.X.
0.011e+034Zea maysZm.13226.1.A1_atCF022192hydrogen-transporting ATP synthase, rotational mechanism-1e-1At4g29480mitochondrial ATP synthase g subunit family proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0043388Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process by which a gene product interacts selectively with DNA (deoxyribonucleic acid).
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage