Gene omics information

Query gene ID At3g13160
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3032.1At3g13160820505pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion, membrane;POMFBAS.X.H.G.
0.7385.5At1g56110842063NOP56 (Arabidopsis homolog of nucleolar protein Nop56)NOP56-like proteinS.X.H.G.
0.7083.5At3g18600821391DEAD/DEAH box helicase, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAVS.X.H.G.
0.6781.6At5g62440836365-Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.S.X.H.G.
0.5570.6At4g32720829408AtLa1 (Arabidopsis thaliana La protein 1)Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.S.X.H.G.
0.5469.5At2g37990818377ribosome biogenesis regulatory protein (RRS1) family proteinF:unknown;P:ribosome biogenesis;C:nucleolus;MFOPBS.X.H.G.
0.5267.4At5g14050831254transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAVS.X.H.G.
0.5267.4At3g11964820370RNA bindingF:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPAS.X.H.G.
0.5065.3At5g57280835833methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;BOMFPAS.X.H.G.
0.4862.5At4g04940825833transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.199.7GSM265418Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
29.999.7GSM265419Arabidopsis, root, longitudinal zone 1, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
28.199.7GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
25.699.7GSM184839Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with salt
24.799.6E-MEXP-849-raw-cel-1181981006
24.499.6GSM133975Birnbaum_1-5_StageI-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
23.599.6GSM266663Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
21.999.6GSM133974Birnbaum_1-4_StageI-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis root
21.599.6GSM265426Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
18.899.5GSM265427Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.472e-22107At1g55890842039pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POMFBAC.G.S.X.
0.032e-1067At1g09190837439-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMC.G.S.X.
0.022e-654At4g35130829665pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBC.G.S.X.
0.014e-550At5g13230831163pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBC.G.S.X.
0.024e-550At4g08210826371pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.024e-550At3g13770820586pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBC.G.S.X.
0.022e-448At5g27110832769pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBC.G.S.X.
0.022e-448At3g50420824206pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.026e-446At3g21470821701pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-344Glycine maxPsAffx.CL2493Contig1_atPsAffx.CL2493Contig1--1e+0At5g59990-C.G.S.X.
0.021e+034Hordeum vulgareContig7642_atContig7642--1e-6At2g38560TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)C.G.S.X.
0.023e-138Oryza sativaOsAffx.6967.1.S1_at---0C.G.S.X.
0.033e-344Populus trichocarpaPtpAffx.4147.1.S1_atDN486419hypothetical protein-3e-3At3g13160pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.036e-136Triticum aestivumTaAffx.22899.1.S1_atCA743526--1e-2At4g26965NADH:ubiquinone oxidoreductase family proteinC.G.S.X.
0.041e-240Vitis vinifera1615658_atCF405207hypothetical protein LOC100248019-2e-2At3g13160pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.021e+034Zea maysZm.12790.2.S1_atAI665589--8e-1At3g05540-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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