Gene omics information

Query gene ID At3g12960
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g12960820482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9597.0At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMS.X.H.G.
0.9195.6At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVS.X.H.G.
0.8994.6At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFS.X.H.G.
0.8994.6At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.S.X.H.G.
0.8793.5At3g51810824344EM1 (LATE EMBRYOGENESIS ABUNDANT 1)Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.S.X.H.G.
0.8793.5At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.8592.4At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8290.9At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.S.X.H.G.
0.8190.4At3g58450825014universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
416.7100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
397.8100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
341.9100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
329.3100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
318.9100.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
311.2100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
311.0100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
304.3100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
303.2100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
272.2100.0GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e+032At5g64690836590neurofilament triplet H protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.012e+032At3g06630819842protein kinase family proteinF:two-component sensor activity, protein serine/threonine kinase activity, protein kinase activity, signal transducer activity, ATP binding;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay);C:unknown;MPOBFVAC.G.S.X.
0.042e+032At3g09890820147ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.028e+030At5g03700831753PAN domain-containing proteinF:sugar binding;P:unknown;C:plasma membrane;PC.G.S.X.
0.028e+030At5g62760836397nuclear protein ZAP-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOVBAC.G.S.X.
0.018e+030At5g25230832594elongation factor Tu family proteinF:translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:nucleolus;BOMFAPC.G.S.X.
0.028e+030At5g01990830729auxin efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOBC.G.S.X.
0.028e+030At4g11480826753protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e+130Glycine maxPsAffx.psZG005xH12f_s_atPsAffx.psZG005xH12f--3e+0At1g55475unknown proteinC.G.S.X.
0.049e-132Hordeum vulgareContig9541_atContig9541--4e-4At4g08520clathrin adaptor complex small chain family proteinC.G.S.X.
0.051e-240Oryza sativaOs08g0104400AK064224.1-Conserved hypothetical protein2e-2At3g12960unknown proteinC.G.S.X.
0.043e+032Populus trichocarpaPtpAffx.7795.1.A1_atBP935594hypothetical protein-1e-9At5g33370GDSL-motif lipase/hydrolase family proteinC.G.S.X.
0.055e-134Triticum aestivumTaAffx.13025.1.S1_s_atBJ210409--9e-1At3g12960unknown proteinC.G.S.X.
0.049e+028Vitis vinifera1621791_atCB975255--7e-1At1g58110bZIP family transcription factorC.G.S.X.
0.051e+128Zea maysZmAffx.968.1.S1_atAI833843--2e+0At5g67110ALC (ALCATRAZ)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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