CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g12960

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g12960 820482 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At3g50980 824262 XERO1 (DEHYDRIN XERO 1) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PM S.X. H.G.
0.91 95.6 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV S.X. H.G.
0.89 94.6 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF S.X. H.G.
0.89 94.6 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. S.X. H.G.
0.87 93.5 At3g51810 824344 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip. S.X. H.G.
0.87 93.5 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.85 92.4 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.82 90.9 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.81 90.4 At3g58450 825014 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
416.7 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
397.8 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
341.9 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
329.3 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
318.9 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
311.2 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
311.0 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
304.3 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
303.2 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
272.2 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e+0 32 At5g64690 836590 neurofilament triplet H protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 2e+0 32 At3g06630 819842 protein kinase family protein F:two-component sensor activity, protein serine/threonine kinase activity, protein kinase activity, signal transducer activity, ATP binding;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay);C:unknown;MPOBFVA C.G. S.X.
0.04 2e+0 32 At3g09890 820147 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 8e+0 30 At5g03700 831753 PAN domain-containing protein F:sugar binding;P:unknown;C:plasma membrane;P C.G. S.X.
0.02 8e+0 30 At5g62760 836397 nuclear protein ZAP-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOVBA C.G. S.X.
0.01 8e+0 30 At5g25230 832594 elongation factor Tu family protein F:translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:nucleolus;BOMFAP C.G. S.X.
0.02 8e+0 30 At5g01990 830729 auxin efflux carrier family protein F:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOB C.G. S.X.
0.02 8e+0 30 At4g11480 826753 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+1 30 Glycine max PsAffx.psZG005xH12f_s_at PsAffx.psZG005xH12f - - 3e+0 At1g55475 unknown protein C.G. S.X.
0.04 9e-1 32 Hordeum vulgare Contig9541_at Contig9541 - - 4e-4 At4g08520 clathrin adaptor complex small chain family protein C.G. S.X.
0.05 1e-2 40 Oryza sativa Os08g0104400 AK064224.1 - Conserved hypothetical protein 2e-2 At3g12960 unknown protein C.G. S.X.
0.04 3e+0 32 Populus trichocarpa PtpAffx.7795.1.A1_at BP935594 hypothetical protein - 1e-9 At5g33370 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.05 5e-1 34 Triticum aestivum TaAffx.13025.1.S1_s_at BJ210409 - - 9e-1 At3g12960 unknown protein C.G. S.X.
0.04 9e+0 28 Vitis vinifera 1621791_at CB975255 - - 7e-1 At1g58110 bZIP family transcription factor C.G. S.X.
0.05 1e+1 28 Zea mays ZmAffx.968.1.S1_at AI833843 - - 2e+0 At5g67110 ALC (ALCATRAZ) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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