Gene omics information

Query gene ID At3g12900
Gene name oxidoreductase, 2OG-Fe(II) oxygenase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At3g12900820473oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMS.X.H.G.
0.6781.6At4g31940829324CYP82C4member of CYP82CS.X.H.G.
0.5065.3At4g19690827713IRT1 (iron-regulated transporter 1)Fe(II) transport protein (IRT1)S.X.H.G.
0.4457.2At1g74770843816protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVBS.X.H.G.
0.4050.8At1g56160842069MYB72 (MYB DOMAIN PROTEIN 72)Encodes a member of the R2R3 transcription factor gene family that is involved in mediating induced systemic resistance. Genetic analysis of loss of function mutants and overexpressor lines indicates MYB72 is necessary but not sufficient for ISR.Interacts in vivo with EIL3.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
898.3100.0GSM265474Arabidopsis, whole roots, -Fe, 72 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
746.3100.0GSM265473Arabidopsis, whole roots, -Fe, 72 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
595.6100.0GSM265472Arabidopsis, whole roots, -Fe, 48 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
586.7100.0GSM265471Arabidopsis, whole roots, -Fe, 48 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
228.8100.0GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
174.3100.0GSM184927Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
159.099.9GSM184928Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
139.499.9GSM184930Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
131.399.9GSM184926Arabidopsis, whole roots, standard conditions, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
125.099.9GSM157324Hammond_3-17_Potassium-starved-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.031e-448At5g63590836478FLS3 (FLAVONOL SYNTHASE 3)F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFMC.G.S.X.
0.039e-342At1g034108387632A6F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFMC.G.S.X.
0.023e-240At5g05600830443oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFMC.G.S.X.
0.015e-136At3g13810820593AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBC.G.S.X.
0.025e-136At2g38240818403oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:response to salt stress;C:unknown;POBFMC.G.S.X.
0.025e-136At1g120108377531-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeencodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidaseC.G.S.X.
0.035e-136At1g066508371752-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.035e-136At1g05010839345EFE (ETHYLENE-FORMING ENZYME)Encodes 1-aminocyclopropane-1-carboxylate oxidaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-136Glycine maxGmaAffx.62877.1.A1_atBE658061--3e+0At5g03350legume lectin family proteinC.G.S.X.
0.037e-857Hordeum vulgareContig14226_atContig14226--2e-7At3g12900oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.037e-240Oryza sativaOs07g01697009635.m00688-Gibberellin n b20-oxidase (Fragment)4e-2At3g12900oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.198e-756Populus trichocarpaPtpAffx.205281.1.S1_atpmrna10469hypothetical protein-6e-7At3g12900oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.036e-756Triticum aestivumTaAffx.57276.1.S1_atCA633008--7e-2At4g33660unknown proteinC.G.S.X.
0.077e-754Vitis vinifera1610362_atCA813623--2e-6At3g12900oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.031e-344Zea maysZm.13480.1.S1_atAY108935.1gibberellin 20 oxidase 2-3e-3At3g12900oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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