CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g12840

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.71 84.2 At3g12840 820466 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.85 92.4 At4g30540 829177 glutamine amidotransferase class-I domain-containing protein F:catalytic activity;P:unknown;C:cellular_component unknown;OBAFPVM S.X. H.G.
0.81 90.4 At1g50190 3767425 - F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown S.X. H.G.
0.80 89.8 At4g18500 827582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At2g02670 3768646 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.73 85.5 At1g18220 838402 ATPUP9 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. S.X. H.G.
0.71 84.2 At4g20290 827776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM S.X. H.G.
0.71 84.2 At4g10410 826633 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.70 83.5 At5g28170 832893 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.65 79.6 At3g16930 820948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
301.8 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
293.5 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
291.4 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
285.3 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
283.5 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
271.2 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
253.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
249.3 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
228.9 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
223.9 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 6e-7 54 At4g10400 826632 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.07 6e-7 54 At4g09920 826581 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.05 4e-5 48 At5g56410 835742 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.04 2e-3 42 At3g10750 820244 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.04 8e-3 40 At5g38565 833845 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.06 3e-2 38 At1g19410 838524 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 3e-2 38 At1g12600 837816 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBA C.G. S.X.
0.04 1e-1 36 At4g10410 826633 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e+0 32 Glycine max HgAffx.23900.1.S1_at CB826526 - - 1e+0 At5g62750 unknown protein C.G. S.X.
0.06 3e-1 34 Hordeum vulgare Contig24666_at Contig24666 - - 6e-1 At3g12840 unknown protein C.G. S.X.
0.07 1e+0 34 Oryza sativa OsAffx.15873.1.S1_at - - - 0 C.G. S.X.
0.03 7e-1 34 Populus trichocarpa PtpAffx.210384.1.S1_at pmrna20406 - - 2e-28 At2g33730 DEAD box RNA helicase, putative C.G. S.X.
0.05 5e-1 34 Triticum aestivum Ta.7170.1.S1_at BJ316709 - - 9e-1 At3g12840 unknown protein C.G. S.X.
0.06 2e+0 30 Vitis vinifera 1619263_at CA814227 - - 2e+0 At2g03933 - C.G. S.X.
0.05 4e+0 30 Zea mays ZmAffx.1359.1.S1_at 40794996-47 - - 1e+1 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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