CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g12700

Gene name aspartyl protease family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At3g12700 820452 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO S.X. H.G.
0.40 50.8 At3g13650 820569 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P S.X. H.G.
0.25 22.6 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO S.X. H.G.
0.22 17.5 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. S.X. H.G.
0.07 1.9 At2g26290 817169 ARSK1 (root-specific kinase 1) F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
100.7 99.9 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
91.1 99.9 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
84.4 99.9 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
84.2 99.9 GSM184913 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
81.6 99.9 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
69.7 99.9 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
68.7 99.9 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
57.3 99.8 GSM142673 SF001_ATH1_A3-Fille-ANGR4-12 GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
53.0 99.8 GSM142674 SF002_ATH1_A5-Fille-WTnodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
52.3 99.8 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 40 At4g26610 828768 D6PKL1 (D6 PROTEIN KINASE LIKE 1) F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA C.G. S.X.
0.01 7e-1 36 At4g08960 826474 phosphotyrosyl phosphatase activator (PTPA) family protein F:phosphatase activator activity;P:biological_process unknown;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 7e-1 36 At4g09140 826493 MLH1 (MUTL-HOMOLOGUE 1) Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization. C.G. S.X.
0.01 7e-1 36 At3g21480 821702 - F:molecular_function unknown;P:biological_process unknown;C:intracellular;MOPBFA C.G. S.X.
0.01 7e-1 36 At3g62980 825473 TIR1 (TRANSPORT INHIBITOR RESPONSE 1) Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. C.G. S.X.
0.01 7e-1 36 At2g29110 817459 ATGLR2.8 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 3e+0 34 At4g30270 829150 MERI5B (meristem-5) encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response. C.G. S.X.
0.01 3e+0 34 At1g19150 838498 LHCA6 PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, C.G. S.X.
0.01 3e+0 34 At1g27090 839598 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.91977.1.S1_s_at CF807702 - - 3e-63 At4g02580 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative C.G. S.X.
0.02 9e-2 38 Hordeum vulgare Contig19274_at Contig19274 - - 4e+0 At5g09230 SRT2 (SIRTUIN 2) C.G. S.X.
0.02 5e+0 34 Oryza sativa OsAffx.31493.1.S1_at - - - 0 C.G. S.X.
0.02 6e-2 40 Populus trichocarpa PtpAffx.217662.1.S1_at pmrna33016 hypothetical protein - 3e-1 At4g28150 unknown protein C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.119356.1.A1_at BJ276004 - - 2e-1 At5g42635 glycine-rich protein C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1610816_at CF210488 hypothetical protein LOC100252698 - 3e-18 At4g28000 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.1396.1.S1_at 40794996-71 - - 6e-1 At5g01230 FtsJ-like methyltransferase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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