Gene omics information

Query gene ID At3g12600
Gene name atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g12600820440atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)F:hydrolase activity;P:unknown;C:unknown;BMPOFS.X.H.G.
0.6579.6At1g61770842474DNAJ heat shock N-terminal domain-containing proteinJ domain protein.S.X.H.G.
0.5974.7At4g35500829702protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.5974.7At2g17530816260protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.5673.0At1g08030837318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBS.X.H.G.
0.5368.6At5g58530835966glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMOBFS.X.H.G.
0.5267.4At1g14560838018mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOS.X.H.G.
0.4862.5At4g26650828772RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBVAS.X.H.G.
0.4659.8At1g06890837199transporter-relatedF:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBAS.X.H.G.
0.4659.8At1g65430842854zinc finger protein-relatedF:ubiquitin-protein ligase activity;P:unknown;C:intracellular;MOPFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
59.299.8GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
47.799.8GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
33.199.7E-MEXP-1138-raw-cel-1432773290
32.699.7GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
32.399.7GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
32.299.7E-MEXP-1138-raw-cel-1432773258
30.199.7GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
29.899.7GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
28.399.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.099.7GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.043e-136At1g12880837845atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12)F:hydrolase activity;P:biological_process unknown;C:unknown;BMPOFC.G.S.X.
0.011e+034At5g32470833206-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;BOFAPMC.G.S.X.
0.011e+034At1g08540837376SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.C.G.S.X.
0.034e+032At5g60860836207AtRABA1f (Arabidopsis Rab GTPase homolog A1f)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAVC.G.S.X.
0.034e+032At5g58787835995zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFC.G.S.X.
0.014e+032At5g11250830995disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMOBFAVC.G.S.X.
0.014e+032At5g57130835819protein bindingF:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.162e-654Glycine maxGma.13553.1.A1_atCD400444--8e-7At3g12600atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)C.G.S.X.
0.061e-756Hordeum vulgareContig9301_atContig9301--3e-2At1g14860atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18)C.G.S.X.
0.052e-654Oryza sativaOsAffx.25770.1.S1_at---0C.G.S.X.
0.221e-1997Populus trichocarpaPtpAffx.156764.1.S1_atDN487190hypothetical protein-2e-19At3g12600atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)C.G.S.X.
0.041e+034Triticum aestivumTaAffx.110993.2.S1_atCA650137--2e-1At1g64160disease resistance-responsive family protein / dirigent family proteinC.G.S.X.
0.244e-1373Vitis vinifera1611547_atCF568787--1e-12At3g12600atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)C.G.S.X.
0.075e-1063Zea maysZm.8879.1.A1_atBM334135nudix hydrolase 13-3e-9At3g12600atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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