CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g12500

Gene name ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. S.X. H.G.
0.86 93.1 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV S.X. H.G.
0.75 86.9 At2g15120 3768033 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.67 81.6 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein S.X. H.G.
0.67 81.6 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
128.6 99.9 GSM39208 RRE2_C2 GSE2169 rre1 and rre2 mutants
125.1 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
115.4 99.9 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
113.0 99.9 GSM39200 Col_C2 GSE2169 rre1 and rre2 mutants
101.3 99.9 GSM39201 Col_C3 GSE2169 rre1 and rre2 mutants
98.7 99.9 GSM39192 RRE1_C2 GSE2169 rre1 and rre2 mutants
97.3 99.9 GSM39199 Col_C1 GSE2169 rre1 and rre2 mutants
94.5 99.9 GSM39209 RRE2_C3 GSE2169 rre1 and rre2 mutants
90.2 99.9 GSM133721 Deeken_A-1-Deeke-Tum_SLD_REP2 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
83.4 99.9 GSM39193 RRE1_C3 GSE2169 rre1 and rre2 mutants
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 1e-7 57 At1g02360 837724 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV C.G. S.X.
0.07 1e-4 48 At4g01700 828131 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF C.G. S.X.
0.02 5e-1 36 At5g47300 834777 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO C.G. S.X.
0.02 5e-1 36 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM C.G. S.X.
0.03 2e+0 34 At5g55508 6241412 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
0.01 2e+0 34 At4g39680 830123 SAP domain-containing protein F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVA C.G. S.X.
0.02 2e+0 34 At4g38620 830018 MYB4 Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2. C.G. S.X.
0.02 2e+0 34 At4g35720 829724 unknown protein F:unknown;P:unknown;C:unknown;PO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-2 40 Glycine max GmaAffx.92499.1.S1_s_at CF809203 Win gene encoding wound-induced protein - 2e-15 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.12 2e-5 50 Hordeum vulgare Contig2992_s_at Contig2992 - - 4e-5 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.09 3e-4 48 Oryza sativa Os06g0726100 Z29962.1 - Endochitinase precursor (EC 3.2.1.14) 1e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.17 7e-4 46 Populus trichocarpa PtpAffx.77318.2.S1_at CX658035 hypothetical protein - 5e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.12 1e-4 48 Triticum aestivum Ta.2783.1.S1_at AB029935.1 chitinase 2 - 2e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.06 6e-4 44 Vitis vinifera 1620505_at Z54234.1 chitinase class I - 2e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.13 6e-11 67 Zea mays Zm.16805.3.S1_at BM381902 basic endochitinase C - 2e-10 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
X GO:0009871 The series of molecular signals mediated by ethylene (ethene) involved in jasmonic acid/ethylene dependent systemic resistance.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00520 Amino sugar and nucleotide sugar metabolism
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage