Gene omics information

Query gene ID At3g12500
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g12500820429ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.S.X.H.G.
0.8693.1At2g43590818961chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMVS.X.H.G.
0.6781.6At4g11650826770ATOSM34 (osmotin 34)osmotin-like proteinS.X.H.G.
0.6781.6At4g16260827320catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;POS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
128.699.9GSM39208RRE2_C2GSE2169rre1 and rre2 mutants
125.199.9GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutants
115.499.9GSM39214RRE2_Chitin4GSE2169rre1 and rre2 mutants
113.099.9GSM39200Col_C2GSE2169rre1 and rre2 mutants
101.399.9GSM39201Col_C3GSE2169rre1 and rre2 mutants
98.799.9GSM39192RRE1_C2GSE2169rre1 and rre2 mutants
97.399.9GSM39199Col_C1GSE2169rre1 and rre2 mutants
94.599.9GSM39209RRE2_C3GSE2169rre1 and rre2 mutants
90.299.9GSM133721Deeken_A-1-Deeke-Tum_SLD_REP2GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
83.499.9GSM39193RRE1_C3GSE2169rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.101e-757At1g02360837724chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVC.G.S.X.
0.071e-448At4g01700828131chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVFC.G.S.X.
0.025e-136At5g47300834777F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POC.G.S.X.
0.025e-136At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMC.G.S.X.
0.032e+034At5g555086241412unknown proteinF:unknown;P:unknown;C:unknownC.G.S.X.
0.012e+034At4g39680830123SAP domain-containing proteinF:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVAC.G.S.X.
0.022e+034At4g38620830018MYB4Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.C.G.S.X.
0.022e+034At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.054e-240Glycine maxGmaAffx.92499.1.S1_s_atCF809203Win gene encoding wound-induced protein-2e-15At3g04720PR4 (PATHOGENESIS-RELATED 4)C.G.S.X.
0.122e-550Hordeum vulgareContig2992_s_atContig2992--4e-5At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.093e-448Oryza sativaOs06g0726100Z29962.1-Endochitinase precursor (EC (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.177e-446Populus trichocarpaPtpAffx.77318.2.S1_atCX658035hypothetical protein-5e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.121e-448Triticum aestivumTa.2783.1.S1_atAB029935.1chitinase 2-2e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.066e-444Vitis vinifera1620505_atZ54234.1chitinase class I-2e-3At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.136e-1167Zea maysZm.16805.3.S1_atBM381902basic endochitinase C-2e-10At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
XGO:0009871The series of molecular signals mediated by ethylene (ethene) involved in jasmonic acid/ethylene dependent systemic resistance.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00520Link to KEGG PATHWAYAmino sugar and nucleotide sugar metabolism
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