Gene omics information

Query gene ID At3g12370
Gene name ribosomal protein L10 family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7888.6At3g12370820415ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPS.X.H.G.
0.7385.5At3g6287082546260S ribosomal protein L7A (RPL7aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane;MOFAPS.X.H.G.
0.7184.2At5g2390083245560S ribosomal protein L13 (RPL13D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MFOPS.X.H.G.
0.7184.2At1g73230843657nascent polypeptide-associated complex (NAC) domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;MFPOS.X.H.G.
0.7184.2At2g3616081818840S ribosomal protein S14 (RPS14A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast, membrane;BOPMAFS.X.H.G.
0.7083.5At1g69620843298RPL34 (RIBOSOMAL PROTEIN L34)putative 60S ribosomal protein L34S.X.H.G.
0.6982.9At3g0256082130840S ribosomal protein S7 (RPS7B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane;MPOFS.X.H.G.
0.6982.9At2g0125081465260S ribosomal protein L7 (RPL7B)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 8 components;MOFAPS.X.H.G.
0.6882.2At3g0920082007660S acidic ribosomal protein P0 (RPP0B)F:structural constituent of ribosome;P:translational elongation, response to salt stress, response to cold, translation;C:in 7 components;MOAFPBS.X.H.G.
0.6882.2At5g10360830900EMB3010 (embryo defective 3010)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MAOFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.799.4GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seeds
13.599.4GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibition
12.899.3GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
11.899.3GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.499.3GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seeds
10.799.2GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.699.2GSM133948Murray_2-4_T6-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
10.699.2GSM299335Wild Type Germinating Seeds With Uniconazole Treatment Set 3 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seeds
10.599.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.399.2GSM134204Murray_3-2_D3-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.151e-21103At5g13510831195ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMFC.G.S.X.
0.044e-342At1g68120843140BPC3 (BASIC PENTACYSTEINE 3)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PC.G.S.X.
0.036e-238At1g23550838965SRO2 (SIMILAR TO RCD ONE 2)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.C.G.S.X.
0.013e-136At5g16270831487SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)Encodes a SCC1/REC8 ortholog that may be involved in mitosis and may represent a mitotic cohesin.C.G.S.X.
0.021e+034At5g21040832228FBX2 (F-BOX PROTEIN 2)Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.C.G.S.X.
0.021e+034At3g46450823795SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:cellular_component unknown;FPMOC.G.S.X.
0.021e+034At1g55940842045CYP708A1member of CYP708AC.G.S.X.
0.021e+034At1g30910839975molybdenum cofactor sulfurase family proteinF:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BMFOPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-136Glycine maxGmaAffx.17452.1.S1_atAW458587--2e-1At3g12370ribosomal protein L10 family proteinC.G.S.X.
0.048e+030Hordeum vulgareHVSMEb0009N20r2_atHVSMEb0009N20r2--6e+0At3g50960PLP3a (Phosducin-like protein 3 homolog)C.G.S.X.
0.032e+034Oryza sativaOs11g05181329639.m02884--1e+0At3g12370ribosomal protein L10 family proteinC.G.S.X.
0.043e-136Populus trichocarpaPtpAffx.219650.1.S1_atpmrna35614hypothetical protein-3e-1At3g12370ribosomal protein L10 family proteinC.G.S.X.
0.044e+032Triticum aestivumTaAffx.113639.1.S1_atCA607904--4e+0At3g12370ribosomal protein L10 family proteinC.G.S.X.
0.148e-546Vitis vinifera1622803_atBQ797421hypothetical protein LOC100245108-8e-24At5g13510ribosomal protein L10 family proteinC.G.S.X.
0.051e-136Zea maysZm.7351.1.A1_atBM08004750S ribosomal protein L10-4e-1At3g12370ribosomal protein L10 family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
LGO:0042254The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
03010Link to KEGG PATHWAYRibosome
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