CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g12230

Gene name scpl14 (serine carboxypeptidase-like 14)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.75 86.9 At5g05900 830475 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF S.X. H.G.
0.73 85.5 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins S.X. H.G.
0.44 57.2 At5g41280 834129 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P S.X. H.G.
0.43 55.3 At1g24320 839048 alpha-glucosidase, putative F:mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity;P:oligosaccharide metabolic process;C:cellular_component unknown;MFOBPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
333.3 100.0 GSM218590 Protoplasted root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
176.7 100.0 GSM218588 Protoplasted root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
169.1 100.0 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
158.2 99.9 GSM184532 Protoplasted root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
147.8 99.9 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
147.0 99.9 GSM184536 Protoplasted root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
137.9 99.9 GSM184545 Whole roots 2hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
118.1 99.9 GSM184489 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
101.7 99.9 GSM218589 Protoplasted root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
97.9 99.9 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.91 0 1828 At3g12240 820404 SCPL15 (serine carboxypeptidase-like 15) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.88 0 1164 At3g12220 820402 scpl16 (serine carboxypeptidase-like 16) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.65 4e-150 531 At3g12203 820399 scpl17 (serine carboxypeptidase-like 17) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.61 2e-71 270 At3g10450 820209 SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.55 4e-70 266 At1g73310 843665 scpl4 (serine carboxypeptidase-like 4) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.56 6e-63 242 At1g73280 843662 scpl3 (serine carboxypeptidase-like 3) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.54 9e-62 238 At1g73270 843661 scpl6 (serine carboxypeptidase-like 6) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-6 56 Glycine max Gma.2669.1.S1_at CA935964 - - 4e-6 At5g09640 SCPL19 C.G. S.X.
0.04 3e-1 36 Hordeum vulgare Contig17621_at Contig17621 - - 1e-1 At1g73310 scpl4 (serine carboxypeptidase-like 4) C.G. S.X.
0.03 8e-2 40 Oryza sativa Os05g0158500 AK106800.1 - Peptidase S10, serine carboxypeptidase familyprotein 1e-3 At5g08260 scpl35 (serine carboxypeptidase-like 35) C.G. S.X.
0.12 2e-4 48 Populus trichocarpa PtpAffx.216396.1.S1_at pmrna31154 hypothetical protein - 1e-14 At5g36180 scpl1 (serine carboxypeptidase-like 1) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.1292.1.A1_at CA701958 - - 1e+0 At4g17010 unknown protein C.G. S.X.
0.04 2e-4 46 Vitis vinifera 1607463_at CB343440 hypothetical protein LOC100255717 - 1e-12 At3g12203 scpl17 (serine carboxypeptidase-like 17) C.G. S.X.
0.02 7e-2 38 Zea mays Zm.12082.2.A1_a_at CF636676 hypothetical protein LOC100278326 - 4e+0 At4g21216 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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